Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_2880 |
Symbol | secD |
ID | 5754658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | - |
Start bp | 3432064 |
End bp | 3433914 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641289191 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001555306 |
Protein GI | 160875990 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000488716 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGA TGCTCGTCAT CGCCATAGGT TGTTTCTATG CCGTACCGAA CCTTTTTGGT GAAGATCACG CGGTGCAAGT GGTGGCGACT CGAGGTGCTG AAGTCACGGC ATCAACCCAA GCCAGTGTGA ACGAGCTGTT AGCCAGTAAG GGCATTGCGG TAAAGCGCTC TGAGCTTGAA AAAGGTCAGT TGTTGGTCCG TGTGCAAAAT GCGGATCAAC AGCTACTGGC GAAAGAATTA ATTGCTGACA GCTTAGGTGA CAAGTTCACT GTGGCGCTCA ACTTAGCCCC AGCGACGCCT AAATGGCTCG AGTCAATGGG CGGCAGCCCA ATGAAACTCG GTCTCGACCT TCGCGGCGGT GTGCATTTCT TAATGGAAGT GGACATGGGC GAAGCGATTC GCAAGATGGA AGAGGCTAAA GTTGCCGATT TCCGTTCACA ATTACGCGAA GAGAAAATTC GTTATGCTGG TATTCGTAGC AATACCACAG GTATCGAAAT CAAGTTCCGT GATGCTGAAA GTCTCGCGAG TGCAGAGCGT TTCCTTAAGT CTCGCAGTAA AGATATGGTG TTCACTGATG CTAGCCGTGG CGAAGATTTT GCCCTGCAAG CTGTGATGAG TGACGTGTAC CTTAAGCAGA TTAAAGAAGA AGCACTGCAA CAAAACATTA CTACCATTCG TAACCGTGTA AACGAGTTAG GTGTGGCTGA GCCTGTAGTA CAACGTCAAG GCGCCGAGCG CATTATCGTT GAGCTGCCAG GTGTGCAAGA TACGGCTCGC GCCAAGGAAA TCTTAGGTGC AACCGCATCG ATTGAATTCC ACATGGTCGA TGACAAAGCC GATCCTAATG CTGCGCAATC TGGCCGTTTA CCAGCGGGTT CTGAAGTGTA CCAGCGCCGC GAAGGTGGCA CTGTGATATT GAAGAAAGAA GTTATGCTGA CCGGTGATCA TATCACGGGC GCACAACCTA GCTTTGACCA GTACAGTCGT CCACAGGTTA GCATCAACCT TGATGCGAAA GGCGGCACCA TTTTCTCTGA CGTGACCAAA GACAACATAG GCAAGCCTAT GGCGACATTG TTCATCGAAT ATAAAGATAG TGGTGAGCGT AATGCCGACG GCAGCGTTAA GATGCAGAAA ATCCAAGAAG TGATTTCTGT TGCGACCATT CAAGCGCGTT TAGGCCGTAA CTTTGTGATC ACTGGCTTAA GCCATGGTGA AGCACAAAAC CTCGCGCTAT TACTGCGTGC GGGTGCCTTG ATTGCCCCAG TGTCGATTGT TGAAGAACGT ACCATTGGTC CAAGCTTAGG TGCTGAAAAC ATTCAAAACG GTGTGCAAGC TATGGTCTGG GGTATGGCAG TTGTCTTACT CTTTATGCTG GTTTACTACC GTGGCTTTGG TCTTATCGCC AACATAGCGC TAACCGCAAA CTTAGTCATG GTGGTGGGCG TAATGTCTAT GATCCCTGGC GCAGTGTTAA CCCTACCGGG TATTGCCGGT ATGGTGTTGA CTGTGGGTAT GGCGGTTGAC GGTAACGTGC TGATCTATGA GCGTATCCGT GAAGAATTAC GTGCGGGCCG TAGCGTTCAG CAGGCCATCC ATGAAGGTTA TGGTAACGCA TTCTCCACCA TCGCCGATGC GAACATCACC ACTTTCCTAA CGGCGCTGAT TCTGTTTGCC GTAGGTACGG GCGCTGTTAA AGGCTTCGCG GTGACCTTGA TGATAGGTAT TGCGACTTCC ATGTTTACCG CAATCGTGGG TACTCGCTCA ATCGTTAACG CGATTTGGGG CGGTAAGCGC GTGAAGACTC TGTCTATCTA A
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Protein sequence | MLNKYPMWKN IMVMLVIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ASVNELLASK GIAVKRSELE KGQLLVRVQN ADQQLLAKEL IADSLGDKFT VALNLAPATP KWLESMGGSP MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRSQLRE EKIRYAGIRS NTTGIEIKFR DAESLASAER FLKSRSKDMV FTDASRGEDF ALQAVMSDVY LKQIKEEALQ QNITTIRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRL PAGSEVYQRR EGGTVILKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSDVTK DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN LALLLRAGAL IAPVSIVEER TIGPSLGAEN IQNGVQAMVW GMAVVLLFML VYYRGFGLIA NIALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS IVNAIWGGKR VKTLSI
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