| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2851 |
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| Symbol | |
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| ID | 5754629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | + |
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| Start bp | 3396055 |
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| End bp | 3400314 |
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| Gene Length | 4260 bp |
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| Protein Length | 1419 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641289162 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001555277 |
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| Protein GI | 160875961 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000359916 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCTAAAG CACTCTTTAA AATCGTCTTG CTCGCTTTCT TTGGCTTGCA TGCATTCGAA
GACGTAAACG CATCTCCCTT TTCTGATAAA TCTCCAATTA TTCTCCAATC ACAATCTTTT
GGTGTCCCGC AAGGACTTTC CCAAAGCACA GTTACGTCTA TAGTCCAGGA CCATGATGGC
TATCTATGGA TTGGAACATT TAATGGACTT AATCGATTTG ATGGGAAAAA CTTTAAGCAT
TTTTATGCAA ATGATGCCAG AACAGGCCTT CCCAGTTCTT TTATCAGAAG TTTACTCATT
GATGAACAAG GCGTGTTATA TGTTGGAACC GATAGTGGTC TAGTCGTATA TGATAAACTG
CAAGAATCAT TTTCTCATTA TGGCCTATCG GTAAATGACT CCCCAGTCTG GAGCCTCAAC
TCAAGTGATA AGAGTTTAAT TGTTGGAACC AACAAAGCAA TTATTGATAT AAGTAACAAA
GAGCAAACTT ATGAACTGTC AAAGAAAGGC CTAAGTGAAA TTAAAAAAAC GATAAAAGTA
GGCGACGATT ATTATATAAG AGACTATGCA GGTACATTAT TTGAACTAAG CGGGAGTGAG
TTAAAAGAGA TAGCTCGAAA AACAATGGAT TTCGAGCAAA AGAATGACAC GACAATGCTA
ATATCATTCA GTGATGGATT ATATGAATAC GAAGGCAATG AAATAGTAAA AGTCGATAAT
CGAGCGTTTT CATTACTTAC AAAATACAAA AAAAACATAT ATGGCTTCAC AAATGAAAAT
ATTGTTGATA TTTCCAACAA CACTACTATT GGACTTTTAT CTCCAGATAG ACCTGACAAA
ACGTCTTCAT TTTTTGCAAC CGAAGATATG TTTATATTAG GAAGTATTGA TCAAGGCATC
ACTATTGTTA AAAAAGTAAA TAATTTAGTG CAAAAAACCA ACTTGACGAC AGATAGCACA
TGGCATCTTA CAAAAAATAC TAAAGGTTTT CTGGTTTCAT CTGACGCTGA AAAAATAAAA
CTTTTTGATG AAAATCTAAA CCTAATAAAA AGTTTCAACA CTCATACTCA AGGATACAAA
TACGCAGTTC TAAGTGACGA TGGGCTTTAT TTTGGTACTA ATACAGGGTT GTTTTTACAG
AAAGATGATT CATCCAAGTT GATTAGCAAA AATATAATAT CATCACTCTC TATTAATGAA
AATAGCTTGA CAATTGCTGC TGGCACACCT GACGGTAAAG TTTTAATCAT CAAAAATGGT
GAAATTACTA ACAGCATTGA TACAAAAAAG AATGAGCCAA TTTTTGACGT AGAGTTAACA
TCTGACAACC TAATATATAT AGCTGGACAA GATGGACTAA AAAAATATGA AAATGGGTTA
TTAGAAAGCT TAAGCAATGA AATAACTTAC AGCATCGAAA AAAGTGATAA TGGCATTTAC
TTTGGAACAT CAACATCACT GATGCTTTAT AATGATACCA ATAAAAAAAT TTCGAGAATA
CTCTCTAACA ATAAAGAGAT CTACGCCATT GTAGATAATG ATGGTTTTAT AACAGCCTCA
TCACTAAGTG AAGTCATTAT TTTTGAAAAA AACAGTAAAG TATCTTATAT CTTAAAAACA
TCAAATGGGA GTCAATATGA GTACAACGCT CCCAATGGTA TCAATATAAA TGGTAACACT
CTACTTGCGG GGATTAGTGG GATTAGTCTA GTATCACCTA AAGATGTTGT AAGTTATGTA
AAGAAAAGCA AGGTAAATAA AACAGAAATA TCAGATTTCT TAGTATTTAA TATAGTTCAA
AATCAAGAAA GCAACTATCT AGCACAATCA ATCGCAGCAT CTAATGAAAT ATCATTGAAA
TACTCTGACT ATCCATTTTC GTTCAACTTT ATATCTCCCA TGTCAGACGA CTCATCAACT
AACTACTACT ATAGAATGTT CGGTCTTTCT GATATATGGA TACCTGCAAA TGGAACAAAC
TCAGCAACAT ATACAAACCT ATCTCCAGGA AATTATACTT TTCAAGTTTA TGCTGTTAAT
TCACTTTCCG GTGAAAAAGC AGCAACAAAA GAGCTTACTG TCATTATAAC ACCTCCTTGG
TGGTCATCAT TTCAAGCAAA ATCTATTTAT GCTGCTATTG TATTATTTAT TTCCTACCTT
GTGACAAAAG CCATATTACG TCGTAGAGAA ACACAAAGAC AGATTGTACT CAGTGAAGAA
CGATTAAAAT TATCATTATG GGGAAGTGGT GATGAAATGT GGGACTGGGA TATAGAAACT
GGCAACATTT TCCGCTCAAA TATCTGGGGA GCACTTGAAT TTCCCCGTGA TGGACACCGT
TCTGGTAAAT CAGATGAAGA GAGCAATATA CATCCAATGG ATCAAGAGCG TGTTCGAGAA
GCGCTCAATA AGCATTTTTA TGGTGAAACA GATCATTTTG AAGCCGCATA CCGAGTAAAA
GGTAAAGACG ACAATTGGGT ATGGATCCTA GACCGCGCCA AAATTGTAGA ACGTGATGAA
AAAGATAATG CCCTGCGAAT GACTGGAACG ATTAAGAATA TTAGTCAATT TAAACAAAAA
GAAGAGCAAC TAAAACTCTT TGAAAAGGCT ATTGAAAATA TTTCGGAAGG CATGTTTATC
CTCGACAGCG AATACCGTTT TGTCGAAGTT AATGAAGCTT GCTGTAAGAT TTCATTACGT
AACCGAACTG ATTTTATTGG TAACTTACTC ACATTTGATT TATATCCTGA AACCTTCTCC
ACCCAAATCA GGACCATGTT GAAACAACAA GGTCGCTGGG CAAATGAAGT AGAAGCCGCA
AGAGGAGATA AAAGTCACTT CCACATGGAG CTCACTATCG ATGCTATCTA TGATGAGTTA
GGCGAATTGT CACACTATGT CGGGGTTTTT TCGGATATTT CGAGACGGAA ACAGCAAGAA
GAAGAACTTA GAAAACTAAC CAATAATGAT CTTTTAACCG GACTACCTAA TCGCTCCAAC
TTACAAGTGA CCTTAAGTAA CTTAGTGAAT CGTGAAATAG CCCATGCGCT AATGGTGCTT
GACCTTGATA ATTTTAAGCG TATTAATGAT TCATTAGGTC ACCAGATTGG AGATACATTA
TTAAAGCTCG TTGCTGCCCG CATTAAGTCC TTACTTCCTA AAAATACCAG TATTTACCGT
CTAGGCGGAG ATGAATTCGC CATTGTATTA GATAAAAACT CAGATATAAG CGCCAGTGCT
GCCATCGCTA ACCGTATTAT CGAAGGGTTA AAACCCGCTT TTGAAGTGAG TAATGAGCAA
CTAGTCCTAG GATTAAGTAT TGGTATAGTG CTATTCCCAG AAGATGAGCA AAGCGAGCAA
GCATTACTGA GGAAAGCAGA TATTGCCATG TACCATGCTA AGTCAGCGGG AGGTAATTGC
TATCAGTTTT ATTCAGAGTC ATTAAATCAG CATGCGATTA GGCAGTTAGA AATAGAGAAT
CTTATCCGTG AAGGCTTAAA AGATGATCTA TTTGAAGTTT ATTATCAGCC TAAGGTTGAT
CTTAAGCGTG GTAAAATTGC AGGCATGGAG GCTTTGGTCA GATTAAATCA TCCAGTACAT
GGCTTGATAC CCCCAAATGA TTTTATTCCA CTTGCTGAGG AAAACGGCTT AATTGTTGAA
ATTGGTGAAA TCGTCTTACG CAAAGCCTGT TTCGCAGCAC AGAAATGGCG TGAACAAGGA
ATATTCAGCG GCAGAGTCGC CGTCAATTTA TCGTCACGTC AATTTGCTCT CCCCGATATC
CAGCAACGAA TAGAGTCAAT TTTAAGACTC ACCAAACTCC CCGCTTGTCA CCTTGAATTA
GAAATAACAG AAGGTACTGT CATTAAGCAG CCGGAAACGG CGATTATTGT CATGCAGCAA
CTGGCTAAAA TGGGCGTTAG TTTGGCACTC GATGATTTCG GCACTGGGTA CTCGTCCCTT
TCATACTTAA AACGTTTCCC GATTCATACT TTAAAAATTG ATAAAGCTTT TGTTGACGAT
ATTGATAAGT CTGATCGCGA TCTCAAAATG GTCGATTCTA TTATCACTAT CGCCCATAAC
ATGGGGCTTT CTGTTGTGGG TGAAGGAGTA GAACAGACTG CGCAATTAAA CATTTTACGA
GCACTTAACT GTGAAGAGAT CCAAGGCTAT ATCTTTAGTA AGGCTATAAA AGAGACCGAG
TTTACCCTGC TACTCCAAGG AGACATGATA AAGCCAAACA CCCAAAGTAA CATTAGTTAA
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| Protein sequence | MPKALFKIVL LAFFGLHAFE DVNASPFSDK SPIILQSQSF GVPQGLSQST VTSIVQDHDG
YLWIGTFNGL NRFDGKNFKH FYANDARTGL PSSFIRSLLI DEQGVLYVGT DSGLVVYDKL
QESFSHYGLS VNDSPVWSLN SSDKSLIVGT NKAIIDISNK EQTYELSKKG LSEIKKTIKV
GDDYYIRDYA GTLFELSGSE LKEIARKTMD FEQKNDTTML ISFSDGLYEY EGNEIVKVDN
RAFSLLTKYK KNIYGFTNEN IVDISNNTTI GLLSPDRPDK TSSFFATEDM FILGSIDQGI
TIVKKVNNLV QKTNLTTDST WHLTKNTKGF LVSSDAEKIK LFDENLNLIK SFNTHTQGYK
YAVLSDDGLY FGTNTGLFLQ KDDSSKLISK NIISSLSINE NSLTIAAGTP DGKVLIIKNG
EITNSIDTKK NEPIFDVELT SDNLIYIAGQ DGLKKYENGL LESLSNEITY SIEKSDNGIY
FGTSTSLMLY NDTNKKISRI LSNNKEIYAI VDNDGFITAS SLSEVIIFEK NSKVSYILKT
SNGSQYEYNA PNGININGNT LLAGISGISL VSPKDVVSYV KKSKVNKTEI SDFLVFNIVQ
NQESNYLAQS IAASNEISLK YSDYPFSFNF ISPMSDDSST NYYYRMFGLS DIWIPANGTN
SATYTNLSPG NYTFQVYAVN SLSGEKAATK ELTVIITPPW WSSFQAKSIY AAIVLFISYL
VTKAILRRRE TQRQIVLSEE RLKLSLWGSG DEMWDWDIET GNIFRSNIWG ALEFPRDGHR
SGKSDEESNI HPMDQERVRE ALNKHFYGET DHFEAAYRVK GKDDNWVWIL DRAKIVERDE
KDNALRMTGT IKNISQFKQK EEQLKLFEKA IENISEGMFI LDSEYRFVEV NEACCKISLR
NRTDFIGNLL TFDLYPETFS TQIRTMLKQQ GRWANEVEAA RGDKSHFHME LTIDAIYDEL
GELSHYVGVF SDISRRKQQE EELRKLTNND LLTGLPNRSN LQVTLSNLVN REIAHALMVL
DLDNFKRIND SLGHQIGDTL LKLVAARIKS LLPKNTSIYR LGGDEFAIVL DKNSDISASA
AIANRIIEGL KPAFEVSNEQ LVLGLSIGIV LFPEDEQSEQ ALLRKADIAM YHAKSAGGNC
YQFYSESLNQ HAIRQLEIEN LIREGLKDDL FEVYYQPKVD LKRGKIAGME ALVRLNHPVH
GLIPPNDFIP LAEENGLIVE IGEIVLRKAC FAAQKWREQG IFSGRVAVNL SSRQFALPDI
QQRIESILRL TKLPACHLEL EITEGTVIKQ PETAIIVMQQ LAKMGVSLAL DDFGTGYSSL
SYLKRFPIHT LKIDKAFVDD IDKSDRDLKM VDSIITIAHN MGLSVVGEGV EQTAQLNILR
ALNCEEIQGY IFSKAIKETE FTLLLQGDMI KPNTQSNIS
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