| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2744 |
|---|
| Symbol | cpdB |
|---|
| ID | 5754517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 3255911 |
|---|
| End bp | 3257956 |
|---|
| Gene Length | 2046 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641289051 |
|---|
| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
|---|
| Protein accession | YP_001555171 |
|---|
| Protein GI | 160875855 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.981325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.563537 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAATA AGAAAATACT CGCAGTGATG ATCACTGCCG CCCTTGGTGT CAGCGCCTGT
AATTCTGATG ACGACAAAGT CGTTCAAGCC GATTTACGGG TACTCGAAAC CACAGATCTG
CACACAAATA TCATGGATTT CAACTACTAC AGTGGTAAAG ACGATCCCAC AATCGGTCTT
GCCCGCACTG CAAGCTTGAT CCACGCTGCA CGCAACGAAG CCAAGAATAG CGTCCTCGTT
GATAACGGCG ATCTACTGCA AGGCAGCCCT ATGGGCGATT ATATGGCTAA AGTGGGCCTG
CAAATGGGCG ATGTTCACCC TGCTTATAAA GCCATGAACC TATTAGATTA TGAAGTCGGC
AATATCGGTA ATCATGAATT TAACTATGGT TTAGATTTCT TAAATAAATC CATTAGTGGT
GCAGATTTCC CTTATATCAA CTCGAACGTT TATTGCGCCG ACGATAATGG TTGCTGGAAA
GAAGTTAAAA AAGGTGAGCA TTTATTCACC CCTTATATCA TCAAACAAAA AATCATTATC
GACAGCGAAG GCAATAATCA AACCATTAAC ATTGGTTATA TTGGTTTTGT GCCACCGCAA
ATTCTATTGT GGGATAAACA AAATCTGACG GGAAAAGTGA CGGTTGAAGA TATCGTTACC
ACCGCGAAAA AATATGTCCC AGAAATGAAA GCTAAAGGGG CCGATATCAT TATCGCCATT
CCACACTCTG GCATTGGTTC GACGGAAAAT CCTGGCGATC CTATGGCTGA AAACGCCACT
TACGCTTTGA CTTATGTTGA CGGTATCGAT GCGATTCTAT TCGGCCACAG CCACTCTATC
TTCCCAGATG CTAAGTATGC TGACTTACCC AATACCGATG TCACTAAGGG CCTACTGAAC
GGCGTTCCCG CAGTGATGCC AGGTCGTTGG GGTGATAACT TAGGGGTGGT TGACTTTAAA
CTCGAACGTA GAGATGACAA GTGGCATGTC CTTACTGCCA AAACGCAAGC TCGCCCTATC
TATGATGGCG CAAATAAAGC CCCATTAGTT GAAGCGGATG CTGCTATTCA CGATGCTGTC
GCAGCCGAGC ACCAAGGTAC CCTCGCCTTT GTGGATGAAC CTATCGGTGT AGCCGCGGCG
GACATGTATA GCTTCCTTAC CTTAGTGCAA GACGACCCTA CGGTACAAAT CGTTTCCGAT
GCGCAAATCG CTAACGTGAA AGCGAAATTA CCTGCAGCAT TAAAAGGGTT GCCAGTACTG
TCAGCCTCTG CACCTTTTAA AGCGGGCGGT CGCCACGGTA CAACCAGCGA TGCCGATCAA
TTTGTGCAAG TCGATAAAGG TCCACTGACC TTTAAAAACG CCGCCGATCT GTACCTGTAT
CCCAATACTA TGGTGGCCGT CAAAGCAACG GGTGCCGAAT TGAAAGATTG GCTTGAGTGC
TCAGCCAACC AGTTCAATCA AATCGACCCA GCAAAAACCA CCCCACAAGA GTTAATCAAC
TGGGATGGCC ATCCAACCTA TAATTTCGAC GTACTCGATG GCTTAACTTA CAAAATTGAT
GTCACTCAAC CGAACAAGTT TGACCGCGAT TGCGCCGTTG TTAATGCCAA CGCAAACCGT
ATCGTTGATT TAAGCTATAA AGACGAAAAC GGCAAAGTCA TCACAGGTGA AGAATTTGCC
GCGAAAGAGT TTATCGTCGC CTCAAATAAC TATCGCGCCT TTGGTGGTAA GTTTGCCGGT
ACGGGTAGCG ACCATGTCGT GCTTGAACTG CCCGATACCA ACCGTGAAGC ATTAGCGGCT
TATATCACAG CGCAATCTCA ATACAACGAA ACCACGGGTA AGTACGAAGG TATGGTCAAT
CCAAGTGCCG ATTACAACTG GGATTTCAAA ACCATCACGA CCAACGTCAC ATTAGACGTT
CGCTTCGAAA CCCAAGACAG TGATAAAGCT GCTACCTTTA TCGAAGCCAA TAAACAACGT
GAAATGAAGA AGATCAGCAA GGATGAACTG GGTTTCGCCG TTTATAGCAT CAACCTAACC
AAATAA
|
|---|
| Protein sequence | MLNKKILAVM ITAALGVSAC NSDDDKVVQA DLRVLETTDL HTNIMDFNYY SGKDDPTIGL
ARTASLIHAA RNEAKNSVLV DNGDLLQGSP MGDYMAKVGL QMGDVHPAYK AMNLLDYEVG
NIGNHEFNYG LDFLNKSISG ADFPYINSNV YCADDNGCWK EVKKGEHLFT PYIIKQKIII
DSEGNNQTIN IGYIGFVPPQ ILLWDKQNLT GKVTVEDIVT TAKKYVPEMK AKGADIIIAI
PHSGIGSTEN PGDPMAENAT YALTYVDGID AILFGHSHSI FPDAKYADLP NTDVTKGLLN
GVPAVMPGRW GDNLGVVDFK LERRDDKWHV LTAKTQARPI YDGANKAPLV EADAAIHDAV
AAEHQGTLAF VDEPIGVAAA DMYSFLTLVQ DDPTVQIVSD AQIANVKAKL PAALKGLPVL
SASAPFKAGG RHGTTSDADQ FVQVDKGPLT FKNAADLYLY PNTMVAVKAT GAELKDWLEC
SANQFNQIDP AKTTPQELIN WDGHPTYNFD VLDGLTYKID VTQPNKFDRD CAVVNANANR
IVDLSYKDEN GKVITGEEFA AKEFIVASNN YRAFGGKFAG TGSDHVVLEL PDTNREALAA
YITAQSQYNE TTGKYEGMVN PSADYNWDFK TITTNVTLDV RFETQDSDKA ATFIEANKQR
EMKKISKDEL GFAVYSINLT K
|
|---|
| |