| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2424 |
|---|
| Symbol | |
|---|
| ID | 5754183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 2864643 |
|---|
| End bp | 2867429 |
|---|
| Gene Length | 2787 bp |
|---|
| Protein Length | 928 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641288718 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001554852 |
|---|
| Protein GI | 160875536 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00236557 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.130217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCTTGT GCAGCTGTTT TTTGAGTATA ACAGGGCAGG CAAGTCCATT GCCCGACGAG
CCATTAATTG TGGTGATGGG GGAGGATAGC TTTCCCTATC AATATGTCGA CAACGATGGC
GAGCCGACTG GACTACTGGT CGATTTATGG AAAGAGTGGG CGAAACAAAG CCATACCCAA
GTGGTTTTTG TGGCGCGACA CTGGCACGAG TCCCTTGATC AACTGCGGCA AGGTAAGGCG
CAAGTGCATA TCGGCATGGG GAAAACCCCA GAGCGTGAGC AAGAGTTCGA CTTTGCTGAG
CCCATCGCCG ATGTCGGCAC TTTTTTATAT CTGCATAAAT CCCTGCAGGG TAAAAAGTCC
ATTAAAGAAC TCATTCCCTT TCAAATTGGT GTGGTAGCTG CTTCATCTCA CGAGGCGGAA
TTGCACCGTA TCGAACCTCA ACTCGTGTTT AAACGTTACG AAAGTCGTGA GAAATTACTT
GCTGGGGTCG CAGCCGGCGA GATTATGGTG TTTGCGGGCT TAGAAGGTTA TTTGAAAGAT
CCCGCTTCAT CCCAAGAGAT TGCCGCGAAT TATCCCAATA CGGCGCGTAT CCAAATTAAG
GCGATGCAAT TTGTTCCTGC GGTCAAAAAG GGCAATCTCG ATTTAGTTGA TAGGATCAAT
AAAGGTTTCA CCGCGCTCGA TCCGCACTTT ATCCAACAAA CGGAGCGACG ATGGCTTGGC
TACCAACGTC AACAAGCTGG GATTGTTATT TCCATGCAAC TGGGCGCCGA GCCTTTTGTG
GACTTAGGGG TCGATGGTTT ACCCCATGGC TTGTATGTGG ACATGTGGCA GCTTTGGTCT
GAGAAGACCG GTATCGCCGT CGATTTTATT TCTGGCGATA TGAACTCCAG TGTGGATGAC
GTTCGCCGAG GTCTTGCCGA TGCGCACATT GGTTATCCAG AGAGTGATGA TGTCAAAACG
GGGCTTAATC GGGCTTGGCA CTTATATACG GTTAAGAGCC GCTTGTTTCT CTTTCAGCAG
CAGTTGACCG ATTTAGACAG CTTAAAAGGT AAACGTATTG GGGTGGTGCC GACGGCGCCT
TATCTGGTGG AGTTACGTAA AGCCTTACCC CAAATGGCAC TGCGCTATTA CGACAATATG
GATGCCATGG TCGCGGGCGC AAGATCGGGC GAGATTGTTG GCTTTGTGGC TTCGGGTGCA
TGGACATCCC ATTATTTACT GCTCAATAAA GGCTGGTCTG ACTTTAGCCA GTATCCCAAT
CTCGAATTTA GCACCAACAT TTATGTGCTG ACTCGCAGTG ATGATCCTGG CCTGACGCAG
CGGATCGCCA ATGGCTTTAA CAATATTAGC AATCAAGAGT TTGCCGATAT TGAAAATAAA
TGGATGCTCA ATCCCAAAGA TCATGTTTTT ACCCAAGCTG AGCGCCATGT CAGCCTAAGC
CCTGCAGAAC AGGCCTATGT GGAAAGTGTA GGCGAGCTTA AAGTGGGCTA TTTAAAGCAG
TGGCCGCCGA TGGAGTTTAT GGATGAGCAG GGCGAGTTTG CGGGGATCAA TAGCGATATC
GTCAAATTAC TCAAGGAACA GCTCAAACTT AAGCTCACGC CCGTTGCCTT TGATGATTGG
CATTCGTTAA TCGACGCACT GCAAAAGGGC GAGGTAAGTT TAGCTGGTAG TGTCGCCCAA
ACGGCGGAGC GCCAGCAGCG TTTAGCGTTT AGTGAGGCAT ATTGGCCATC GCCGTGGGCA
TTAGTGTCGC AATTGGAGCA AGTCTCGGTA TTCAATATTG CCCAGCTCGC AGGACAAAGG
GTAGCTGTGG TCGAAGGCTA TCATTTGGTG GCGCAATTGA TGAGTCTTGA ACCTTCACTC
AAGTTAGTGA TAGTGCCAAA TACGCAGGCG GGATTGGCGG CGGTGACGAA TGGCAATGCG
GATGTGTTTA TCGATAAAGT GGTGACGTTG GCGTCTGAAC TTAAAACCAG CCACTACCCG
ACGCTGAAAA TGTCATTGCT GAGTGATCTT GCCGATCAGC ATAGCCATAT TGGTGTTTAT
CCTCAGTTTG CGCCGCTGGT GCCACTGATT AACAAAGCCT TAGCCTTGAT TGATGCTCAG
CATCAGCAGC AAATTTATGC GCGTTGGGTG TCATTTTCTG TCGCGACAGA GAGCGCTAAA
TATCTGCAAT GGCTGCGTTA TATCGTATTT GGCGTGATCA TTTTGTGCTT AGTGATGGTG
GCAGTGTTGT TAGTGAATCG CCGCTTAAAT CGTGAAATCA CCCAGCGACT CGTCGCTGAA
AAACGTTTGC TGCATGTGGC GAACCACGAT GCTTTGACTC AGTTACCTAA CCGCGCCTTG
CTCGATGACA GATTAGCCCA AGCTTTGCTG TCCCATCAGC GCGAGCAAGC CCATTTTGCC
TTGCTATTTG TCGATCTGGA TGGGTTTAAA CAAATCAATG ATCAACATGG TCATCCCATT
GGCGATGAAT TGCTGATACA AGTTGCCCAA AAGTTAACCA AGGTTATCCG TGGCTCAGAT
ACCGTGGCGC GATTTGGCGG CGATGAGTTT GTTATCCTGC TAAATCGTGT GCAAGATCTC
GATGCTGCAA CCCAAGTTGC TGATAATATT CTACAGGCAC TGTCGAGCCC TTTGCTTATT
CAAGGCGTCA GTGTCAGCAT AGCGGTCAGT ATGGGCGTGG TGATTTATCC CCGCGATGGT
GATACCGCGA TAGGCTTATT GAAAAAAGCC GATCAGTTAA TGTACCAAGC AAAAAGTTGC
GGCGGGCGTT GTTATCGCTC AGCTTGA
|
|---|
| Protein sequence | MILCSCFLSI TGQASPLPDE PLIVVMGEDS FPYQYVDNDG EPTGLLVDLW KEWAKQSHTQ
VVFVARHWHE SLDQLRQGKA QVHIGMGKTP EREQEFDFAE PIADVGTFLY LHKSLQGKKS
IKELIPFQIG VVAASSHEAE LHRIEPQLVF KRYESREKLL AGVAAGEIMV FAGLEGYLKD
PASSQEIAAN YPNTARIQIK AMQFVPAVKK GNLDLVDRIN KGFTALDPHF IQQTERRWLG
YQRQQAGIVI SMQLGAEPFV DLGVDGLPHG LYVDMWQLWS EKTGIAVDFI SGDMNSSVDD
VRRGLADAHI GYPESDDVKT GLNRAWHLYT VKSRLFLFQQ QLTDLDSLKG KRIGVVPTAP
YLVELRKALP QMALRYYDNM DAMVAGARSG EIVGFVASGA WTSHYLLLNK GWSDFSQYPN
LEFSTNIYVL TRSDDPGLTQ RIANGFNNIS NQEFADIENK WMLNPKDHVF TQAERHVSLS
PAEQAYVESV GELKVGYLKQ WPPMEFMDEQ GEFAGINSDI VKLLKEQLKL KLTPVAFDDW
HSLIDALQKG EVSLAGSVAQ TAERQQRLAF SEAYWPSPWA LVSQLEQVSV FNIAQLAGQR
VAVVEGYHLV AQLMSLEPSL KLVIVPNTQA GLAAVTNGNA DVFIDKVVTL ASELKTSHYP
TLKMSLLSDL ADQHSHIGVY PQFAPLVPLI NKALALIDAQ HQQQIYARWV SFSVATESAK
YLQWLRYIVF GVIILCLVMV AVLLVNRRLN REITQRLVAE KRLLHVANHD ALTQLPNRAL
LDDRLAQALL SHQREQAHFA LLFVDLDGFK QINDQHGHPI GDELLIQVAQ KLTKVIRGSD
TVARFGGDEF VILLNRVQDL DAATQVADNI LQALSSPLLI QGVSVSIAVS MGVVIYPRDG
DTAIGLLKKA DQLMYQAKSC GGRCYRSA
|
|---|
| |