| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2384 |
|---|
| Symbol | emrD |
|---|
| ID | 5754143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 2814191 |
|---|
| End bp | 2815423 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641288678 |
|---|
| Product | multidrug resistance protein D |
|---|
| Protein accession | YP_001554812 |
|---|
| Protein GI | 160875496 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.214025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000132803 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGCA CGCCACACTC TCCTATTCAT CACGATGTCG CTCCAGCGGC GAGTCAGTCT
AGTTTACTGT TAATGATTGT CTTTATGGTC GCCTGTGGCC AAATGGCGCA AACGATTTTT
GTGCCTGCCC TTCCGCAAAT TGCACTCGGG CTCCATGTGG ACGCCAGTCA GCTACAAGCA
GTGATGGCCT GTTACTTACT CTCCTATGGG ATGTTTCAAT TTGTGTATGG CCCAGTGTCA
GATCGCATTG GCCGCAAAAT GCCACTCGTC GTGGGTATCG CTATTTTCAT CATAGGAGCA
GTGTTTGCGG CTCAGGCCAC AAGCTTTAAC CAACTGATTA TGGCGAGCCT TATCCAAGGA
TTAGGCACAG CCAGCGCGGG CGCTTTATGC CGGAGCATTC CCCGCGATCA TTACTTTGGC
GACCGACTGG TTAAATTTAA TAGTTATGTT TCTATGGCCG TAGTGTTTTT ACCTTTACTG
GCACCATTTA TCGGTAGCGC CAGTGCGGCC TACTTCGGCT GGCAAGCCGT GTACTGGGTG
TTAGCAGGAT TCGGTGCTGT GGTCTGGCTG TTATTGATAT TCGCCTTTAA AGAGTCATTA
CCTAAGGCGC AGCGGGAACA TCAAGCCGTT ATCGCATCCT ATCGTCATGT CCTGCGCCAT
AGAGCATTTC GAGCTTACTT GTTTTCATTG ATCGCAACCT TTGCGGGTAT TGCGGCGTTT
GAAGCCATTG CTGGCGTACT CTATGGCCAA TATCTTGGAC TGACACCCTT CATGGTCAGT
TGTTATTTTG TGGCGCCGAT TCCAGGCTAT TTATTGGGCG CGCTGATTGC AGGTCGACAA
AACAAGCCGC AAAGAGTTAT CTATCAAGGT GTTGCACTGC TCGGCGCTGG TGCCTTATTT
ATGTTGATCC CGGGGCTTTT TAATTTAGTC GTCAGTTGGA GTTTACTGGT TGGATCGATT
TTATTCTTCA GTGGCGCCGG TATGCTGTTT CCTACCCTGA CCTCGGCGGC TTTAGAGCCA
TTTCCACGTC AAGCAGGAAT TGCGGGGGCA TTACTGGGAG GATTACAAAA TTTTGGTGCC
GGACTTGCCG CATTGACTAT GTCTTTAGTG CCTATGGGCG GCCAGTTGAG CATAGGTTTA
TTAAGCGCTG CCATGGTGGT GTTAGTGATT TTGTCTTTGT ATTACGCCAG AGATCAAAAT
GACACTCACC ACAATTTGAT GCCACAGATT TAA
|
|---|
| Protein sequence | MSGTPHSPIH HDVAPAASQS SLLLMIVFMV ACGQMAQTIF VPALPQIALG LHVDASQLQA
VMACYLLSYG MFQFVYGPVS DRIGRKMPLV VGIAIFIIGA VFAAQATSFN QLIMASLIQG
LGTASAGALC RSIPRDHYFG DRLVKFNSYV SMAVVFLPLL APFIGSASAA YFGWQAVYWV
LAGFGAVVWL LLIFAFKESL PKAQREHQAV IASYRHVLRH RAFRAYLFSL IATFAGIAAF
EAIAGVLYGQ YLGLTPFMVS CYFVAPIPGY LLGALIAGRQ NKPQRVIYQG VALLGAGALF
MLIPGLFNLV VSWSLLVGSI LFFSGAGMLF PTLTSAALEP FPRQAGIAGA LLGGLQNFGA
GLAALTMSLV PMGGQLSIGL LSAAMVVLVI LSLYYARDQN DTHHNLMPQI
|
|---|
| |