| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2249 |
|---|
| Symbol | |
|---|
| ID | 5754005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 2673584 |
|---|
| End bp | 2675059 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641288540 |
|---|
| Product | YscC/HrcC family type III secretion outer membrane protein |
|---|
| Protein accession | YP_001554677 |
|---|
| Protein GI | 160875361 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.570406 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0166215 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TACTCAGTTT ACTATTACTG TGTCAGATGG GCCTAGCTCA GGCTGCACCA
CTGACAAACA TTAAATGGCA AGGTGAGCCC TTTGTCATGA TCAGTCGAGG TACAGCGCTA
ACCTCAGTCA TCCAGGACTT TGCCAGTAAT TATGGCGTAC CTGTCATTGT CAGTAATAAG
GTCAACGACA ACTATATTGG CCAAATCCAA GAACAAGATC CTAAATCCGT TATTCAAGAT
CTGACCCGTC GCTATGGCTT AGTTTGGTAC TACAACAACG AAGTCTTATA TGTTTACAAA
GCCAGTGAAA TTAATAGTGA AGTGCTACCG TTAACTAGCT TATCCGCGAC TAAGGTCGAC
CATTACCTGC GCAGTGCAGG AGTGTTAGAT AAGGGGGTCT GTAACATTAA ATCTATGGCA
GGGATCAGTG GCTTACAAGT CACAGGTGTA CCCGAATGCA TTAACAGTGT CACCAAACTT
ACGGCACAAC TTGATGCCAA TGCTAAACAA ACCACAGAAA ACCAAGAAAC AGTTAAAGTC
TATCCACTGA AATACGCATC TGCCACAGAC TCTATTTATG AATATCGTAG CCAACCTGTG
AGTATTCCAG GATTAGTCAC GGTGCTAAAA GAAATGGATC AAGGTACACA AGTCGCCAAT
GCAGTGGCGG GTTCTGTGAG TAATATTAGC GGCCCAGTCT TTGCCGCTGA TCCTCGTCAA
AACGCCATCA TAGTCCGTGG AAGTGCCCGT GATATGGCCA CTTATGGCTC TTTGATAAGA
CAACTCGATA CTAAGCCCTC CATGATTGAA GTGTCTGTAT CGATATTCGA TGTGGACGCC
TCTGACTTTA AACAGTTGGG CATAGATTGG TCGGCGTCAG CCAAATTAGG GGGCGGTTCA
GTCAGTTTCA ACAGTGGTGA TAGCAGTGAC AATTTTTCCA CTGTCATAGG CAATACTGGC
AACTTCATGA TGCGCCTCAA TGCACTAGAG AAGAACTCTA AGGCCAAAGT GCTCTCACGT
CCCTCTGTGG TTACGTTAAA CAATGTGCAA GCAGTACTCG ATAAAAACGT GACATTTTAC
ACTAAGTTGG AAGGGGATAA AGTCGCTAAA TTAGAGTCAG TGACCACTGG TTCTCTATTA
CGAGTCACAC CAAGATTGAT TGATGAAGTA GGTCATCAGG CTGTGATGTT GGATCTCAAT
ATTCAGGATG GTCAACAGAG CCAAGCAGTG AGCCGTAGTG AACCATTACC ACAAGTGCAA
AACTCCGAGA TCTCGACTCA GGCGACGCTG AAATCGGGGG AGAGTCTGTT ACTCGGCGGC
TTCGTACAAG ATAGAGATGA AACGACCCAG AACAAGATCC CGTTACTAGG CGATCTACCA
TTACTGGGCG GTTTGTTTAG AAGCACAGAT CACCACACTC AAAGCGTGAT GCGTCTGTTC
CTGATCAAAG CGGAACCCGT TAACCAAGGA GATTAA
|
|---|
| Protein sequence | MKKLLSLLLL CQMGLAQAAP LTNIKWQGEP FVMISRGTAL TSVIQDFASN YGVPVIVSNK
VNDNYIGQIQ EQDPKSVIQD LTRRYGLVWY YNNEVLYVYK ASEINSEVLP LTSLSATKVD
HYLRSAGVLD KGVCNIKSMA GISGLQVTGV PECINSVTKL TAQLDANAKQ TTENQETVKV
YPLKYASATD SIYEYRSQPV SIPGLVTVLK EMDQGTQVAN AVAGSVSNIS GPVFAADPRQ
NAIIVRGSAR DMATYGSLIR QLDTKPSMIE VSVSIFDVDA SDFKQLGIDW SASAKLGGGS
VSFNSGDSSD NFSTVIGNTG NFMMRLNALE KNSKAKVLSR PSVVTLNNVQ AVLDKNVTFY
TKLEGDKVAK LESVTTGSLL RVTPRLIDEV GHQAVMLDLN IQDGQQSQAV SRSEPLPQVQ
NSEISTQATL KSGESLLLGG FVQDRDETTQ NKIPLLGDLP LLGGLFRSTD HHTQSVMRLF
LIKAEPVNQG D
|
|---|
| |