| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2241 |
|---|
| Symbol | |
|---|
| ID | 5753997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 2663066 |
|---|
| End bp | 2663956 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641288532 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001554669 |
|---|
| Protein GI | 160875353 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000667129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGACATTC ACGAACAACA ACGCTTTGAT TTACTTTATG AACAACATCT TACCAACTTA
ACCTTGCAAG GCAAGCGGCC TGCAACCATT GATGCCTATA GCCGAGCTAT ACGCCGTATT
GCGGCATATT TTGACTGCTG CCCCGACACC CTGACCACCG ATGATTTAAA GCGCTATTTT
GCCGACTTAA TTGCCTCACA TTCATGGAGC ACCGTCAAAC TCGACCGTAA CGGCTTGCAG
TTTTTCTACT TTCACGTCCT CAATAAATCT TGGCAGTGGC TTAATATTGT TAAGCCTCCA
CAGGTGAAGC ACCTGCCCGA TATCCTCACG CCCTGCGAGG TCGCGATAGT TATCAGCCTC
ACGCGCCAGC TGCGTTATCA GGTCTGTTTC TTAACCCTGT ACAGCATGGG ATTGCGCCTT
GGTGAAGCGA TTTCATTACA GGTCGGGGAT ATTGATGCGG GGCTGATGCA GGTGCATATC
CGTGATGCTA AAGGTGGCAA GGATAGACTG GTGCCTTTAC CTCAACGCAC CTTGTTAGCC
TTACGCTATT ATTGGCGCAC CCACCGTCAT CCTCACTGGC TATTTCCGGG TAAAGATAAT
CAACCTGATT CACTCATGGA CAGAGGCGGG CTCCAAAAAG CCATGAAGCA AGTCATTTTA
GAGTGCAACA TTCATAAAGC CATCAGTCCG CACAGTCTAC GCCACAGTTA TGCCACCCAT
TTACTGGAGC AAGGACTCGA TTTGCGCTCA GTGCAAACAC TGCTCGGCCA CCATAGCCTG
AATACCACCG CCCGTTACAC GCGGCTCACT GATATCACCC GTAAAAATAC CTGTGAGGCG
ATTAACCAAC TGACCAACGG CTTAGCTTTG AGGTGGGAGT GTGGGTTATG A
|
|---|
| Protein sequence | MDIHEQQRFD LLYEQHLTNL TLQGKRPATI DAYSRAIRRI AAYFDCCPDT LTTDDLKRYF
ADLIASHSWS TVKLDRNGLQ FFYFHVLNKS WQWLNIVKPP QVKHLPDILT PCEVAIVISL
TRQLRYQVCF LTLYSMGLRL GEAISLQVGD IDAGLMQVHI RDAKGGKDRL VPLPQRTLLA
LRYYWRTHRH PHWLFPGKDN QPDSLMDRGG LQKAMKQVIL ECNIHKAISP HSLRHSYATH
LLEQGLDLRS VQTLLGHHSL NTTARYTRLT DITRKNTCEA INQLTNGLAL RWECGL
|
|---|
| |