| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2235 |
|---|
| Symbol | |
|---|
| ID | 5753991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 2654472 |
|---|
| End bp | 2656406 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641288527 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001554664 |
|---|
| Protein GI | 160875348 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.986822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00107006 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAAC AAATCTTTAA AGCCAATATG GTTATTTGTC GCAATAATCG TGACTACCGG
ATAGTCATGC TCGATGACAC GTTAGTGACA CTAGAGGTTG TGGACAGCAA ACATCATCAG
GTGTTATCGA TTGACCAGCT ATTGTCTGAA TATCAACTAG GAAGTTTGAG CCTCCCTAAG
ACAAATCTGA ATCTTGACCA ATCTTGGCTA AACGAACAAC AGAAGGCTGA TCTTCGGCGT
TATAACACCT ACCTAAACTA TCTAGACAAA CTCGAATACC CAGGTGCAAT ACGTTCACTC
AATATGGCTA TTTCGACCTG CGGAGAGATA TTAAATGAAC CGGTGAATTG CCGTCCATCA
ACATCAACAC TGCGCCGCTG GTATTCAAAA TGGCTAAACA ATAATAGACA ATTCATCTAT
CTGCTGGCCT CCAGAAAACA CGATCCAAAC CTGACACTCA GCTGCAGAAT CGATGCAGCG
ATGCGTTCTC TCGTCGACGA TGTCATTGAT TGTTTTTATC TGACTCTTAA TGGCCCCAAC
GCGGCGGATT GTTACCGAAC GCTTATGCAA CAACACAGGC GCATGGCACT TGACTGCCCA
ATGATATCAA AATCGACATT TTACAGAGAA ATAAAAAAAT TAGATGAAAG CGTTATTATT
AGGCGGCGGC AAGGTTCGGT CGCTGCAAAT AAATATCTGC GCACTGCAAA CCATCAATAT
CAGGTCAATG GGCTATTTGA AAGATGTGAA ATGGATGCGG TTCACGTCGG TATTTATCTC
GTTGATCAAC ATGGCGATAT CGTTGGGAAG CCGATCATTT TCTTGATGAT TGATGCTTTT
AGCCGCTGCA TTATGGGAAT GCATATCAGT ATCCAAGAAG GAGAAACCAC TAATGCAGCG
GTGAGCGCAT TACGCCATGC CATTTTGCCC AAATCCAATC AACAATATTC CTTTATGGAA
AATCCATGGA CATGCCATGG TACGCCCATG GATCTGTACG TCGATTCTGG CGCAGCATTC
ATTAATGAAT CATTCGACGC ACTATTAGCT CAACTCAAGA TCAATCGAAT CGCTGGGCCG
TCACGCCAGC CCTGGAAACA CAGTTTTATT GAACGCTTTA ATAGTACGTT ACGCGACAAA
CTCAAGGGGA TACCTGGATA TGTCGGAAAA TTAACGGATG GTTTCACCTA TGATCACCCG
GCAAAGCACT ATGCCACCCT GACGGTCGAG GAATTCGAAA AGATTGTCTG TATTCTCATC
AATGATATAT ACCATCAAGA AGCGCATGCA GGAGTAGGAA ATCAAACGCC AATAGCGATG
TGGAACACAC ATATTCGCTA TTCTCCGGCT ATTGTGCCTG CCAATGTTGC GATATTTGAT
CTTTACCTGC GGCAACAAAA ACGAGGCACA CTCCAGCAAT TAAAGGGATT GCAGTATAAA
AATCAGTTTT TTAATTCCAT GGAATTACGA AACCTTTTTG AACAATTAAA AAAGAATAGT
CGTGATCGCG GCAAAGTCAC TTTTTATGTT GATGAGCTAA ACGCCAGTAA TATCATGGTC
ATTAACCCGT TAAACCAATC TGTGTTAACT GTGCCTAACA CCAACAAATT AGCTTGGGGA
AAAACCTTCC TGCAACTGAA AATGACCAAG AAAATTTTCA TGCCTAACGC AGGTGAACTG
AAGGTCAACG ATATCACAAA ACAGGCCCTC GATCGCAAAA AGAAAGCCGC TCGAGACGTG
AAAACGAGCC ACAATCTTGC CGATGAGACG TTGTCCATGG ACACAGCGCT GACTCAAGAT
GTTATTCAAG GCATGTTAAC TAAACGTGAA ACAGTGGCTC ATCAGGCGCT GGTATTATCA
CCAGCAAAAC CGACGGGCAG TGATGTCCCA GAATCCGCCG TGATCCCTAA AATAATCAAT
TACCAAACCA GCTAG
|
|---|
| Protein sequence | MAQQIFKANM VICRNNRDYR IVMLDDTLVT LEVVDSKHHQ VLSIDQLLSE YQLGSLSLPK
TNLNLDQSWL NEQQKADLRR YNTYLNYLDK LEYPGAIRSL NMAISTCGEI LNEPVNCRPS
TSTLRRWYSK WLNNNRQFIY LLASRKHDPN LTLSCRIDAA MRSLVDDVID CFYLTLNGPN
AADCYRTLMQ QHRRMALDCP MISKSTFYRE IKKLDESVII RRRQGSVAAN KYLRTANHQY
QVNGLFERCE MDAVHVGIYL VDQHGDIVGK PIIFLMIDAF SRCIMGMHIS IQEGETTNAA
VSALRHAILP KSNQQYSFME NPWTCHGTPM DLYVDSGAAF INESFDALLA QLKINRIAGP
SRQPWKHSFI ERFNSTLRDK LKGIPGYVGK LTDGFTYDHP AKHYATLTVE EFEKIVCILI
NDIYHQEAHA GVGNQTPIAM WNTHIRYSPA IVPANVAIFD LYLRQQKRGT LQQLKGLQYK
NQFFNSMELR NLFEQLKKNS RDRGKVTFYV DELNASNIMV INPLNQSVLT VPNTNKLAWG
KTFLQLKMTK KIFMPNAGEL KVNDITKQAL DRKKKAARDV KTSHNLADET LSMDTALTQD
VIQGMLTKRE TVAHQALVLS PAKPTGSDVP ESAVIPKIIN YQTS
|
|---|
| |