| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2100 |
|---|
| Symbol | |
|---|
| ID | 5753845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 2508438 |
|---|
| End bp | 2510363 |
|---|
| Gene Length | 1926 bp |
|---|
| Protein Length | 641 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641288381 |
|---|
| Product | lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001554529 |
|---|
| Protein GI | 160875213 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.254828 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCAAAG CCGTGATGAA TGTGGTTATA TCCAGCGCAA TATTGCTCGC AGGCGCCTTG
AATGCCCCTT CTGCATTCGC GTTAACGCCA ACGCAGAAAA CCTTCCTTGA GGCCGAAAAA
GCCTTAAAGA AACAAGACTA TGAAGTCTAT AAACCCCTAC GGGCAAAATT GGGCGATTAT
CCGCTGGCGA TTTACTTAGA CCATGATATC GACATCGGCG ACCTCAATGG TTTGCATGGC
GCTGCGGCAA AAAATCTGAT TGATAAGTAT CAAACCACGC CTATGTACAA CAGGTTAAGG
TCTAAATACT TAAACAATGC GGGAACCCAA AAACGCTGGA GTGATTATCT TGCGATAAGC
CCCGATGTCC CTACCGACAT CCGCCTGCAA TGTTATTACT ACGAAGCAAA ACTTGCCAAG
GGCGAGATAA AAACCGTCTA TGCGGCGGCG CAATCACTCT GGGTCTTTGG TAGTTCACGG
CCAAAAGAAT GTGATCCCCT GTTCAACGCT TGGACCAAAG CGGGTAAACG CACTCAAGAT
GTGATCTGGG CGCGGATGAT GCTGAGTTTT GAGACTGGCG AAACCAGTCT GCTGAGCTAT
TTATCCCAGA AAATCACCAC CCATAATAAC GAAGCGAAGC GCTTAGTCGC CGTCTATAAA
GATCCAAACA GCCTGCGCCA TACCGAAAAG TTTAAGGATA AAAATCCGAT TGTGGGTGAC
ATAGTCGCGG CGGGATTAAA ACGTCTTGCC CGCAAGGATC TCGACCAAGC GATTAATTTG
TATGAACGGT ATCAAAAGGC TAATCGTTTC ACGCCAGCAC AAGCCCAACA ACTGGATAAA
TACCTGGTTC GCCGTATCTT AATCGAACAA GATGATAGCC ATAAAAGCTA TGTCGACAAT
GTGCTGGCCG AGCTGAAAAG TGACGACTTA TTTGAACGCC GGTTAAGATG GGCCATTCGC
GATCACGACA TGCGCAGCAT TGCCCGTTAT TTAAATTTAC TGCAACCTGA AACCTTGGCT
AAGGAGCGCT GGCAATATTG GCTCTATCGC ACTAATGCTA AAGATGCGCC AGAAAGTGCC
ACCAAAGCGC TGGCGACAAT CAGCAATGAA CGTAATTTTT ACGGTTTTGC CGCCGCACAG
TTTTTAAATA AACCCGTCTC GCTGAATCAA AGCCCTGAGC CTGTCGTCGA CGCCAGCAGC
CAAAAATTAA CCGATGATGT GGGTTTTGTG CGCGTGCAAG AGCTAATGGC GCTGGATCGT
TATTTCGATG CACGTTACGA ATGGATGTCG CTGCTCAGAC GCAGTGACAA TACTATGCGA
GCCCGTTACG GCCGTTATGC CCATGAGCAA GGCTGGTATG ATTTTGGCGT CGAAGCCAGT
ATCCAAGGTA AGTTGTGGGA TGACATTCCC CTACGCTTCC CGATGGCGCA CCAAGAAGGT
TTTGAACACG CCAGTAAAAA GCACAAAGTG AACATAGATG AAATCCGAGC GATCAGTCGC
CGCGAGAGCG CATTTTATCT TTATGCGACC TCAGGCGTCG GTGCCCGCGG CTTAATGCAA
ATTATGCCTG CGACCGCTAA AGCAACCGCC AAGAAACATG GGGCTAAATA TAGCGATCCT
AAGGATCTTT ATAGCGCGGA GCTTAACCTC AATCTTGGCA GTGCTTACTA TGCCCAGTTG
TTGAAAGAGT TTAACCAGAA CCGTATCCTC GCCACAGCCG CCTATAACGC CGGTCCGTCA
CGGGTGCGTC GCTGGTTGGC AAACTCAGAT GGTAAACTCG ATGCCATGGG CTTTATCGAA
GCCATTCCCT TCACTGAGAC CCGTGAATAT GTGCAAGCCG TCTTCAGCTA TCGATTGATT
TATGAGGCGC AGGAGCAAAA AGCGCAGCCA TTATTCAGCG AAGCCGAACT GAAGTTTGCT
TACTAA
|
|---|
| Protein sequence | MCKAVMNVVI SSAILLAGAL NAPSAFALTP TQKTFLEAEK ALKKQDYEVY KPLRAKLGDY
PLAIYLDHDI DIGDLNGLHG AAAKNLIDKY QTTPMYNRLR SKYLNNAGTQ KRWSDYLAIS
PDVPTDIRLQ CYYYEAKLAK GEIKTVYAAA QSLWVFGSSR PKECDPLFNA WTKAGKRTQD
VIWARMMLSF ETGETSLLSY LSQKITTHNN EAKRLVAVYK DPNSLRHTEK FKDKNPIVGD
IVAAGLKRLA RKDLDQAINL YERYQKANRF TPAQAQQLDK YLVRRILIEQ DDSHKSYVDN
VLAELKSDDL FERRLRWAIR DHDMRSIARY LNLLQPETLA KERWQYWLYR TNAKDAPESA
TKALATISNE RNFYGFAAAQ FLNKPVSLNQ SPEPVVDASS QKLTDDVGFV RVQELMALDR
YFDARYEWMS LLRRSDNTMR ARYGRYAHEQ GWYDFGVEAS IQGKLWDDIP LRFPMAHQEG
FEHASKKHKV NIDEIRAISR RESAFYLYAT SGVGARGLMQ IMPATAKATA KKHGAKYSDP
KDLYSAELNL NLGSAYYAQL LKEFNQNRIL ATAAYNAGPS RVRRWLANSD GKLDAMGFIE
AIPFTETREY VQAVFSYRLI YEAQEQKAQP LFSEAELKFA Y
|
|---|
| |