Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_2089 |
Symbol | |
ID | 5753834 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | + |
Start bp | 2487660 |
End bp | 2489909 |
Gene Length | 2250 bp |
Protein Length | 749 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641288370 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001554518 |
Protein GI | 160875202 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGTACG GCGTTAATCT TCCAGATCTG CTCGACCATA CTGATGTTAA ACTCGCCCAC AATGTCAGCA TAGCTTGCTA TAGCAGTATT CTCTCTATGC TGCTTAATGG CGCACCGCTA CATGAAATCT TGCACGCCTT AGTGCTAAAA ATCGAAGCGC AAAAGATAGG CACTCGAGGG TCTGTATTAC TGCTCAGCGG TGACGGCAAA CGTTTGTTGT TAGGCGCTGC GCCCCATTTA CCCGACAGTT ACAACCAAGC GATTAATGGG GTCGAGATTG GCCCAAATGT CGGCTCCTGC GGCACCGCGG CTTATTTTGC AAAGCGCATC ATTGTTGAAG ACATAGCTAC ACATCCTTAT TGGGAAAATT ATAAAGAACT GCCATTACGC GCCGGTCTTA AATCTTGTTG GTCTGAACCT ATCAAAGATA ATCAAGGCAA AGTGCTCGGT ACATTTGCCA TGTACTACGA TACGATAAAG TCCCCAACTG AGCTTGATTT AGAGCTGATT TCAGAGGCGG CACGATTAGC CAGTTTGGCC ATTGAGCGCA GTCGGGCAAT GGAGTTTCAG CATTTAGCGG TGAAAATTTT TGATCGCTTA CCTTTGGCGT TGGTTATCTC CAATTCTGAT GATTCCGTCC TCTATGCTAA CCCTGCTTTT AAGCACATCG TTCTTCCACA AGATATTGAT ATAGCAAATT TTAATCCTAA GGTGTTTTTG TCTGCGTCTC AACCCAATGA GTTAGTCGGC CTATTTGAGC ATTTAGCGCA GGATAAAATG TGGCAGGGGG AATTGGTTGG CTTAAGGGGC AATGGTGAGG AGTTTTACCT AGACCTTATC GTCAGTACAT TTCGAGAGCC TAATGGATTA CAGCCGTGTT TTGCGTGGTT ATTTTCCGAT ATTAGCGAAC GTAAAAAAGC GGCAAAGCTG ATTAAGTATC AGGCCAATAA TGACTCGCTA ACTGGGCTTG CTAACCGTAA TGCCTTGTTT AAACAGATCC AATCCTTAAT TACCTCCGAC AGCCTGACGC CCGGCTTTAG TTTTATGCTG ATGGATTTAG ATAACTTTAA GCAAGTTAAC GACACCCATG GCCACGACAA AGGTGATGCA TTATTAGTGC AAGTGGTGCG GCAGATTTGT GAATGTCTCA ATGACACTAT GATGTTTGCA CGCCTCGGCG GTGATGAGTT TGCCTTGCTA TTACCTGGGA TAGTCAATCA GAAAGAGTTG GCGCAACTTG CTGAAACAAT TAATAAGCAT GTGGCAAAAC GTTATGTACT TGCCGATGGC AAAGGCGTAT ATAGCTCGGT AAGTATTGGT ATTGCGCGTT TTCCAGAAGA TGCCCTCGAT CTCGAGCAGC TGTTAAATTG CGCCGATCAG GCCATGTATA TTTCAAAGGC TAACGGTCGT AATCGATATC ATTTTTTTAC TGAGCAAATG CAGCTCAATG CCGAGCGCAT TGCCAGCCTT CATAATCAAC TCAAGCAGGC ACTCGATCAA CAGACCTTCG AGCTTTATTA CCAGCCCATA GTGAATGCGA CCACAGGTTT GATTGTTCGC GCCGAGGTTT TACTTCGTTG GCAGCTTGAA GGGCAATTCA TTCCCCCCGA TGAGTTTATT CCTATCGCGG AGAACAGCGG CTTAATTGTT GATATTGGTC GAGATGTGCG CCTTGGCGCT ATGCAAACCA TCTTAGAGAT GCAGGCTCAT AATTGGCCGA TTAACTTATC GGTAAATGTG TCGACCTTTG AGTTTTGGTC CCATGAACTG CAAGATGCCT TTGTGGATTC CTTCGCTGAG ATTACCGAGC AACTCGAAGT AACAGATTTC CCCTATGACA GGTTAACCCT TGAGATCACT GAGTCTTTGC TGATGAAGCA ACATACGCAT CTTATTGATG TGCTTAATGG TTTGCGGCTT AAGGGGATTA ACATTTCATT GGACGACTTT GGTACGGGTT ACTCATCTCT ATCTTATTTA GCTAATTTTC CTATCGATCA AATTAAGATC GACAAGAGTT TTATCGACCG ATTAGATGAA GGCAAGCGCC ACGAAGCGTT GGTGGAGGCC ATAGTGCGGT TAAGCCATGC GTTAGATTTA ACCGTGACGG CAGAAGGGGT GGAAACTGAG TCACAACTCA AGTTTGTGAT GTCGAATCAT ATTCAAGAAA TTCAAGGCTA TCTTTTCTAT AAACCTATGC CTAAAGCCGC CTTCTTTGCG CTGCTGGCAA AGCAAGCTGA GCTGCATTAG
|
Protein sequence | MAYGVNLPDL LDHTDVKLAH NVSIACYSSI LSMLLNGAPL HEILHALVLK IEAQKIGTRG SVLLLSGDGK RLLLGAAPHL PDSYNQAING VEIGPNVGSC GTAAYFAKRI IVEDIATHPY WENYKELPLR AGLKSCWSEP IKDNQGKVLG TFAMYYDTIK SPTELDLELI SEAARLASLA IERSRAMEFQ HLAVKIFDRL PLALVISNSD DSVLYANPAF KHIVLPQDID IANFNPKVFL SASQPNELVG LFEHLAQDKM WQGELVGLRG NGEEFYLDLI VSTFREPNGL QPCFAWLFSD ISERKKAAKL IKYQANNDSL TGLANRNALF KQIQSLITSD SLTPGFSFML MDLDNFKQVN DTHGHDKGDA LLVQVVRQIC ECLNDTMMFA RLGGDEFALL LPGIVNQKEL AQLAETINKH VAKRYVLADG KGVYSSVSIG IARFPEDALD LEQLLNCADQ AMYISKANGR NRYHFFTEQM QLNAERIASL HNQLKQALDQ QTFELYYQPI VNATTGLIVR AEVLLRWQLE GQFIPPDEFI PIAENSGLIV DIGRDVRLGA MQTILEMQAH NWPINLSVNV STFEFWSHEL QDAFVDSFAE ITEQLEVTDF PYDRLTLEIT ESLLMKQHTH LIDVLNGLRL KGINISLDDF GTGYSSLSYL ANFPIDQIKI DKSFIDRLDE GKRHEALVEA IVRLSHALDL TVTAEGVETE SQLKFVMSNH IQEIQGYLFY KPMPKAAFFA LLAKQAELH
|
| |