Gene Sbal195_2089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal195_2089 
Symbol 
ID5753834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS195 
KingdomBacteria 
Replicon accessionNC_009997 
Strand
Start bp2487660 
End bp2489909 
Gene Length2250 bp 
Protein Length749 aa 
Translation table11 
GC content45% 
IMG OID641288370 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001554518 
Protein GI160875202 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTACG GCGTTAATCT TCCAGATCTG CTCGACCATA CTGATGTTAA ACTCGCCCAC 
AATGTCAGCA TAGCTTGCTA TAGCAGTATT CTCTCTATGC TGCTTAATGG CGCACCGCTA
CATGAAATCT TGCACGCCTT AGTGCTAAAA ATCGAAGCGC AAAAGATAGG CACTCGAGGG
TCTGTATTAC TGCTCAGCGG TGACGGCAAA CGTTTGTTGT TAGGCGCTGC GCCCCATTTA
CCCGACAGTT ACAACCAAGC GATTAATGGG GTCGAGATTG GCCCAAATGT CGGCTCCTGC
GGCACCGCGG CTTATTTTGC AAAGCGCATC ATTGTTGAAG ACATAGCTAC ACATCCTTAT
TGGGAAAATT ATAAAGAACT GCCATTACGC GCCGGTCTTA AATCTTGTTG GTCTGAACCT
ATCAAAGATA ATCAAGGCAA AGTGCTCGGT ACATTTGCCA TGTACTACGA TACGATAAAG
TCCCCAACTG AGCTTGATTT AGAGCTGATT TCAGAGGCGG CACGATTAGC CAGTTTGGCC
ATTGAGCGCA GTCGGGCAAT GGAGTTTCAG CATTTAGCGG TGAAAATTTT TGATCGCTTA
CCTTTGGCGT TGGTTATCTC CAATTCTGAT GATTCCGTCC TCTATGCTAA CCCTGCTTTT
AAGCACATCG TTCTTCCACA AGATATTGAT ATAGCAAATT TTAATCCTAA GGTGTTTTTG
TCTGCGTCTC AACCCAATGA GTTAGTCGGC CTATTTGAGC ATTTAGCGCA GGATAAAATG
TGGCAGGGGG AATTGGTTGG CTTAAGGGGC AATGGTGAGG AGTTTTACCT AGACCTTATC
GTCAGTACAT TTCGAGAGCC TAATGGATTA CAGCCGTGTT TTGCGTGGTT ATTTTCCGAT
ATTAGCGAAC GTAAAAAAGC GGCAAAGCTG ATTAAGTATC AGGCCAATAA TGACTCGCTA
ACTGGGCTTG CTAACCGTAA TGCCTTGTTT AAACAGATCC AATCCTTAAT TACCTCCGAC
AGCCTGACGC CCGGCTTTAG TTTTATGCTG ATGGATTTAG ATAACTTTAA GCAAGTTAAC
GACACCCATG GCCACGACAA AGGTGATGCA TTATTAGTGC AAGTGGTGCG GCAGATTTGT
GAATGTCTCA ATGACACTAT GATGTTTGCA CGCCTCGGCG GTGATGAGTT TGCCTTGCTA
TTACCTGGGA TAGTCAATCA GAAAGAGTTG GCGCAACTTG CTGAAACAAT TAATAAGCAT
GTGGCAAAAC GTTATGTACT TGCCGATGGC AAAGGCGTAT ATAGCTCGGT AAGTATTGGT
ATTGCGCGTT TTCCAGAAGA TGCCCTCGAT CTCGAGCAGC TGTTAAATTG CGCCGATCAG
GCCATGTATA TTTCAAAGGC TAACGGTCGT AATCGATATC ATTTTTTTAC TGAGCAAATG
CAGCTCAATG CCGAGCGCAT TGCCAGCCTT CATAATCAAC TCAAGCAGGC ACTCGATCAA
CAGACCTTCG AGCTTTATTA CCAGCCCATA GTGAATGCGA CCACAGGTTT GATTGTTCGC
GCCGAGGTTT TACTTCGTTG GCAGCTTGAA GGGCAATTCA TTCCCCCCGA TGAGTTTATT
CCTATCGCGG AGAACAGCGG CTTAATTGTT GATATTGGTC GAGATGTGCG CCTTGGCGCT
ATGCAAACCA TCTTAGAGAT GCAGGCTCAT AATTGGCCGA TTAACTTATC GGTAAATGTG
TCGACCTTTG AGTTTTGGTC CCATGAACTG CAAGATGCCT TTGTGGATTC CTTCGCTGAG
ATTACCGAGC AACTCGAAGT AACAGATTTC CCCTATGACA GGTTAACCCT TGAGATCACT
GAGTCTTTGC TGATGAAGCA ACATACGCAT CTTATTGATG TGCTTAATGG TTTGCGGCTT
AAGGGGATTA ACATTTCATT GGACGACTTT GGTACGGGTT ACTCATCTCT ATCTTATTTA
GCTAATTTTC CTATCGATCA AATTAAGATC GACAAGAGTT TTATCGACCG ATTAGATGAA
GGCAAGCGCC ACGAAGCGTT GGTGGAGGCC ATAGTGCGGT TAAGCCATGC GTTAGATTTA
ACCGTGACGG CAGAAGGGGT GGAAACTGAG TCACAACTCA AGTTTGTGAT GTCGAATCAT
ATTCAAGAAA TTCAAGGCTA TCTTTTCTAT AAACCTATGC CTAAAGCCGC CTTCTTTGCG
CTGCTGGCAA AGCAAGCTGA GCTGCATTAG
 
Protein sequence
MAYGVNLPDL LDHTDVKLAH NVSIACYSSI LSMLLNGAPL HEILHALVLK IEAQKIGTRG 
SVLLLSGDGK RLLLGAAPHL PDSYNQAING VEIGPNVGSC GTAAYFAKRI IVEDIATHPY
WENYKELPLR AGLKSCWSEP IKDNQGKVLG TFAMYYDTIK SPTELDLELI SEAARLASLA
IERSRAMEFQ HLAVKIFDRL PLALVISNSD DSVLYANPAF KHIVLPQDID IANFNPKVFL
SASQPNELVG LFEHLAQDKM WQGELVGLRG NGEEFYLDLI VSTFREPNGL QPCFAWLFSD
ISERKKAAKL IKYQANNDSL TGLANRNALF KQIQSLITSD SLTPGFSFML MDLDNFKQVN
DTHGHDKGDA LLVQVVRQIC ECLNDTMMFA RLGGDEFALL LPGIVNQKEL AQLAETINKH
VAKRYVLADG KGVYSSVSIG IARFPEDALD LEQLLNCADQ AMYISKANGR NRYHFFTEQM
QLNAERIASL HNQLKQALDQ QTFELYYQPI VNATTGLIVR AEVLLRWQLE GQFIPPDEFI
PIAENSGLIV DIGRDVRLGA MQTILEMQAH NWPINLSVNV STFEFWSHEL QDAFVDSFAE
ITEQLEVTDF PYDRLTLEIT ESLLMKQHTH LIDVLNGLRL KGINISLDDF GTGYSSLSYL
ANFPIDQIKI DKSFIDRLDE GKRHEALVEA IVRLSHALDL TVTAEGVETE SQLKFVMSNH
IQEIQGYLFY KPMPKAAFFA LLAKQAELH