| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1752 |
|---|
| Symbol | |
|---|
| ID | 5753488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 2101976 |
|---|
| End bp | 2102692 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641288026 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001554183 |
|---|
| Protein GI | 160874867 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000718269 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.2896 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAA AGCAATACGA TTTAGTGATT TTCGATTGGG ATGGCACTCT GATGGACTCC
ATCGGTAAAA TTATCACCTG TATTGAAAAT ATGGCTAAGG CATTACAGTT ACCTATCCCA
ACCGAAAGCG ATATTCGCGA TATCATCGGT CTTTCTATGA CTGAAGCGCT GCGAGTCCTG
TTTCCTCAGG GGCTCAATCT CAGCGCTTCT TCTGCCTATT CTCAGCGTCA ACATCCTAAA
AATGCATTTA GCCAAGGCGA AGATGATCCA TATCAGCAGA TGCGCATTGA GTTTAAAGCA
CAATATTTGC ATTTAGACAC CACGCCAACG CCACTCTTTG CACAAGCACC TATTTTAATC
GATGAGTTAC ATGCTCAAGG TTATCAATTA GCCGTTGCAA CCGGTAAGGC CCGTGCGGGA
CTTGACCGCG TTTTTGCGCA AACGGGCTTA GGTCGATACT TTGTTGCGTC ACGCTGCGCT
GATGAAGTGC ACAGCAAACC CCATCCTGAA ATGATTTCAA GCTTGCTGAA AGAATTGAAT
ATTGCCCCGA ACCGAGCCCT AATGGTGGGT GATTCTCTGC TGGATTTGAC CATGGCGGCC
AATGCCGGGA TTGATAGTAT TGGCGTGACC TATGGCGCCC ACAGTGCCGA AAAGTTACTG
CAAGCAGGAC CTATCGCTTT GATTGACTCT CCTGCGCAAT TGCTGCAATA CCTCTAA
|
|---|
| Protein sequence | MKTKQYDLVI FDWDGTLMDS IGKIITCIEN MAKALQLPIP TESDIRDIIG LSMTEALRVL
FPQGLNLSAS SAYSQRQHPK NAFSQGEDDP YQQMRIEFKA QYLHLDTTPT PLFAQAPILI
DELHAQGYQL AVATGKARAG LDRVFAQTGL GRYFVASRCA DEVHSKPHPE MISSLLKELN
IAPNRALMVG DSLLDLTMAA NAGIDSIGVT YGAHSAEKLL QAGPIALIDS PAQLLQYL
|
|---|
| |