| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1747 |
|---|
| Symbol | rrmA |
|---|
| ID | 5753483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 2093225 |
|---|
| End bp | 2094040 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641288021 |
|---|
| Product | 23S rRNA methyltransferase A |
|---|
| Protein accession | YP_001554178 |
|---|
| Protein GI | 160874862 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00290496 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.326236 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTATT TATGTCCCCT GTGTTCCGCG CCGCTGACGT TAACGGATCG AACTTGGGGT
TGTCCACAGC AACATAAGTT TGATATGGCC AAAGAGGGCT ATGTCAACTT ATTGCCTGTA
CAGAAGAAAA ACTCAAAAGA TCCTGGCGAT AACAAGCAGA TGATGTTTGC TCGGCGTGAA
TTTCTAAACG AAGGCTACTA TCAAGATTTG AGTGATAGAG TGAATGCACT CGCGCTCGAA
TTTGGTGCTG AAGCAAAGCA GATCCTCGAT ATAGGCTGTG GGGAAGGGTA CTACAGCCAG
CGTTTATTCA ATGTGTTGAA TCAGCACCAT GATTGTGATT TACAAGGCAT AGATATTTCT
AAGTCAGCAA TTAAATATGC GGCTAAACGC TACCCCAATT TAGCATTTTG TGTGGCAAGT
GCCTATGAGA TGCCCATCGT CTCTCAAAGT GTCGATCTTG CCATTCGCAT TTATGCACCT
TCAAAAGTTG AAGAGCTACA ACGCATTATG GCTGATGGTG GCATCTTGAT AACAGTCTCT
CCCGGACCTT CGCATCATTT CGCCTTGAAG CAACAGATTT ATGCTGAGCC TAGATTGCAT
ACCGTATCAG CCGCGCATAT TCCCAGATTT GAGTGCCTGC ATCAGGAACG CTTAATTTCT
CAACTTGAAC TGACAAAAAG TGAACATATT GCTCATTTTT TAGAAATGAC GCCTTACGCT
TGGAAGTTTA CCGATGCGCA AAAGCAAGCA TTTGCTCTGC AAGGACTGAG TTGTGAATTG
GATTTCCAAA TTGAAGTGCA TCGCATTTCA AGATAA
|
|---|
| Protein sequence | MHYLCPLCSA PLTLTDRTWG CPQQHKFDMA KEGYVNLLPV QKKNSKDPGD NKQMMFARRE
FLNEGYYQDL SDRVNALALE FGAEAKQILD IGCGEGYYSQ RLFNVLNQHH DCDLQGIDIS
KSAIKYAAKR YPNLAFCVAS AYEMPIVSQS VDLAIRIYAP SKVEELQRIM ADGGILITVS
PGPSHHFALK QQIYAEPRLH TVSAAHIPRF ECLHQERLIS QLELTKSEHI AHFLEMTPYA
WKFTDAQKQA FALQGLSCEL DFQIEVHRIS R
|
|---|
| |