| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1607 |
|---|
| Symbol | |
|---|
| ID | 5753339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 1937716 |
|---|
| End bp | 1938957 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641287879 |
|---|
| Product | transcriptional regulator, CdaR |
|---|
| Protein accession | YP_001554040 |
|---|
| Protein GI | 160874724 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0115925 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATCTGC TTGATTCTGC CATCGCTAAA CAGATTGTGA GTCGCACAAT GAAAATCATT
GGCCACAATA TCAATGTGAT GAACGGCCAA GGAGTAATTT TAGGCTCAGG CGATCCTAAA
CGTATTGGTT CAACCCACGA AGGTGCGCTG CTGGCCATTG CCCAAAATCG CAATGTGGAG
ATAAGCCAAG AAGTGGCCTC TGGGCTGCAT GGCGTAAAAC CTGGGATCAA TTTACCCTTG
CATTATCAAG GACAAATCAT AGGTGTTGTC GGCATTACTG GCGATCCAAG TGAGCTTACC
CATTACGGTG AATTACTCAA AATGACCGCC GAAATGATTG TTGAACAAGC TAACCTGCAG
GATAAATTGC AGTGGGAGAA TCGCCAGCGC GAAGAGTTTA TTTTGCAGTT GATCAAAGCT
GAAACCGACG ATGATGAGCA GTTGCACCGC TGGGCAAAAC AGTTAGAAAT TGATATCAGC
CTGCCACGGG TCGCGGCCAT TATTGAGATC AGCGAGAAGC ACACCCAAAA ACAACATTTA
AAGACTGACG CCAACTCATC GGCCTTGTAC TTAGCAGAAG CTTCCGCTCA GTCCGCCGAT
GAACGCAGCC CCAGAGTCAG TGAAACCCTC AAGCAAGTGC TGCATCTATT GCAATACCCT
GACCGAGGCA ACTTGATTGC CATGACCTCA ATGTCGCAAT TGGTGATCCT AAAGCCTGCT
TTTTTAGATG GTAAACAATG GGATCCTGAG CTTGAAAATC AGCGTATCGA CAAGCTGTTA
CAACGCTTAC CCGCCCAAAT GGATTTAAAC TTTAAAATTG CCTTGGGCCA CTTTTTCCCC
GAAAAAGGCG GTATTGCGCG CTCCTATCAA ACCGCGCAGG AAACCTTAGC CCTAGGTAAA
CAACGCAATG CTGAGGGCAA TAAATACCTG TTCGAAGATT ACTCCCTGCA AGTACTACTG
GCGGGACTTA AACATGACTG GCGCGGTCAG GCACTAGCGT CACCCTATCA GCAACTCGCC
ATGGCCGATA AAAACGGCCA GTTACGCAAA ACTTTAGCCG CCTATATCAC TCACTTTGGT
GATGCGCAGC AATGTGCGAA TGCGCTGTTT ATACACCGCA ACACACTTAG ATATCGCCTC
GATAAAATTC AGCAAATCAC CCAAGCCGAT ATCCAATCCC TGCATGGATT ATTGAGCCTG
TATCTTGGAC AACTGCTTGA TACTTCGGCA ACCCCAAGAT AA
|
|---|
| Protein sequence | MYLLDSAIAK QIVSRTMKII GHNINVMNGQ GVILGSGDPK RIGSTHEGAL LAIAQNRNVE
ISQEVASGLH GVKPGINLPL HYQGQIIGVV GITGDPSELT HYGELLKMTA EMIVEQANLQ
DKLQWENRQR EEFILQLIKA ETDDDEQLHR WAKQLEIDIS LPRVAAIIEI SEKHTQKQHL
KTDANSSALY LAEASAQSAD ERSPRVSETL KQVLHLLQYP DRGNLIAMTS MSQLVILKPA
FLDGKQWDPE LENQRIDKLL QRLPAQMDLN FKIALGHFFP EKGGIARSYQ TAQETLALGK
QRNAEGNKYL FEDYSLQVLL AGLKHDWRGQ ALASPYQQLA MADKNGQLRK TLAAYITHFG
DAQQCANALF IHRNTLRYRL DKIQQITQAD IQSLHGLLSL YLGQLLDTSA TPR
|
|---|
| |