Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_1544 |
Symbol | |
ID | 5753276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | - |
Start bp | 1859916 |
End bp | 1863185 |
Gene Length | 3270 bp |
Protein Length | 1089 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641287816 |
Product | transcriptional regulator, CadC |
Protein accession | YP_001553977 |
Protein GI | 160874661 |
COG category | [K] Transcription |
COG ID | [COG3710] DNA-binding winged-HTH domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACATCG TTATGAGTGA CAGCACATTT TTCTTTGGTG AATGGCAAAT CAATCCCAGC GCCAATAGTC TGCTCCTTGG CAAACAAGTC AAACAACTTG AGCCCAAGGC GATGGATGTG CTGCTGTTTC TCTGCCAACG GGCGGGCGAA GTCGTCAGCA GTGATGAAAT AGTCAGCCAC TGCTGGCCGG GTGTTGATAC TGGCGACAAC CCACTACATA AAATTATCAA TCAGTTACGT AGAGCATTAG GCGATAGCGC CACCGATCCC ACCTATATAG AAACCATACG CAAACGCGGC TATCGCACCT TAGCCGAAGT GCGTTTTCCT ATCGGCCACG AAGCCACCGC CAGCCCGCAA AGTTGGCAAG GCGGCTCGCC CTTTCCGGGT CTGCAAGCCT ATAACGCTAA CTATGCCGAG GTGTTTTTTG GTCGCAGTGA ACAAATCAGC ACTTTGCTTA ACCGTATCAG CCAGCAAATC ATCTATGGTC GTGCCTTCTG TCTGGTTTTA GGCCCAAGTG GCAGCGGTAA ATCCTCCCTG ATAAATGCCG GTGTTGTGCC CAATTTAATG AAGGGCGGCG GCTATAACGG CATTGGTGTC GCGTCATTCA GCAGCTTAGA TTTTGCCGAT GTGAGTAAAG GGCAACTGTT AACCGATCTT GCCAGCGCTA TGCTCGACTG GGAAATCAAC GACACGCCAG TGTTCGAAGG CATGAGTGCC GATACTCTGG CGGTTCAACT CATCGAAGAT ATCCAAGGCG TAATCAACCA GTGCACCCAA GCGCTCAAGG CTAAACCCTT TTCCAATCCG TTTTTTGCCT TGTTTATCGA CCGATTAGAA GTGTTGCTCT CATCACCGCT ATTTAGCGAT ACCGAACGAA CTCAGTTCAT AGAATTATTG GAACAACTCG CCACCTCTAA GGCCGTGATT ATTATCAGTG CCTGTCGCAA CGATTTTTAT CCTTTACTTG TGGGCTACCC AAGCTTAATG GCCGGTAAAT CTCGCGGCGC CCACTTTGAC TTAGCGCCGC CGACACGCAC TGAACTGTTG CAAATGATCC GCCTGCCCGC GGTGGCCGCC AACTTAAGCT GGGAAGTTGA CAGCGAAACC GCAATGCCGC TCGATGAAAT GCTCTGCAGC GACGCCGCCA GTAACCCAGA TGCACTGCCC ATGTTGCAAT ACACGCTGCA GGCCTTGTAT TTGCAGCGCA GCGCCGACGA TAAGTTATTA GTCTCGGTTT ATCATGCCCT TGGCGGTATT GAAGGGGCGA TTGGTAAAAA TGCCGAGCAA GCGATTTCCC ATTTAAGCGA TGCCGAAAAA GCCAGTCTGC CACGGATTTT ATCCCTGCTA GTCACCCTGC GCGAAGATGA AAAGTCCATC ACCAGCCGCA CCGCCCGCTG GTCGCAGCTG CAAAGCACCG CCGAAACCGC CCTAGTGCAA GCCATGGTCG ATAGCCGCTT ATTCGTGTCG CATCTGCAAA ATGGTGAACC CTGTTTTAGC ATCGCCCACG AAGCCCTGCT GCGCCGTTGG CCACGGGCGA CGGCTTGGAT TAGCGAACAT AGCGACAGTT TGAGCATTAA GAGTCGCCTG CAGCATCTTT CAACACGCTG GCTCAGCGAA GCCAAACACA GCGCCTATCT ACTCGCTGAA GGTAAACCTT TAAAAGAAGC CCAAAGCCTC AGCCAAAATC CGTTATTCGA TTTAGACGAT CCCGAAACCG CCTTTATCGC AGCCTCCACC AAACGCGCCA ATATGTTGCG CTGGACGAGG CGTTTAACCG TTACCCTGTT ATGCGTCCTC ACCCTCACCT CCATTATCAT GAGTGTGCGC AGCATAGAAG CTGAAAAACT CGCCCTGCAA AAACGCCTCG CCGCCGAAGA TTTGCTCGGT TTCATGGTGG GCGACTTCGC CGACAAGATG CGCGGCATCG GCCGAATGGA CTTACTCGAC GGGATCAGCA ATAAAGCACT GGAATATTTC AGTGATTTTT CCAATAAAGA GGATGATGCA CACTTAAGCT TCGACGCCCG CTTCCAACAC GGCCAAACCT TAGAGGCCAT GGGCGAAGTG GCATATTCGC GCAATAAAAT CGATGAAGCT CGCAGCGCAT TACTCGCGGC GCAAGAAAAA ATGCTGCCAC TTTTGAGTTT ACAGCCGGAA AACTTAGCCC TACTAAAAAC TCTAGGTGCC AATGCCTTTT GGTTAGGACA GCTTAAGTAT GATGTGAGTG ATTGGGCAGC ATCACGTCCC TACTTCGAGC AATACTTAAA ATACAGCCAA ACGATGTACG CCCTTGCGCC CGAAGATAAA GATGCACTTA TGGAGCTGTC ATACGCCCAC AATACTTTGG GCTCTGTGTC TATGAAGCAG CAGGAATTTG CCAAAGCGCA GCAAGATTTT GAGGAATCAT TAAGGCTTAA ATTGCTCGCC TTAGCGAAAG CCCCCGAGGA TAGCCAGTTG ATTGCCGATG TGGCCGATAC CCGATCTTGG TTAGCCAGCG CTGCGGTTTC TCTTGGAGAT TTAAGTTACG CCGTACAAGC CCATCAAGAA ATCCAACAAC AGCTTGAAAG TCAAAATTTA GAAAAACAAC CTTATTTATT AGATAGGCTC GCAGGGAGCT ATCAGAATTT AGCAACTCTA CTAGCATATC AAGGGCATTT TTCTCAAGCA TCGTCAAAAG CAGAATCTGG ACTAGCTATT ATTATCGATG TTCTAAAACA GGATCCAGAA AATGAAAAGT GGAAGAGACT TAAATTTTAT TCATCATTTC AATCAATTGA ACTTTCAACT AGTACAGCAG CACCTAACGC ACAGGATAGG CTAATAAAGG TAAAATATGA ACTTGATTCC GATGAAAAAT TTAAGCTGTC ACCAAAATAT CAAGAAACTC TTGCAAAGTA TTATTACACT CAAGCAAAAT CATTTTTTGA GACGAAGAAT TACAAAAACG GCACAATCAA CATTAAACTC GCAGTCAAGT TGTACTACGA CTTATCAAAA TCATTTAAGC AGAATTATAT ATATTATTCA GATTTGAGTA TTGCAGAGCT TTTATATGCC TCATACCTAA AGAAATCTAA AAACTCTGAC GCTGTTATAG AATTATGCAA AAATACTAAA GAAAGACTTC AGCCTTTAGT TGAAAAAGAT AAAGACCCTA GATTTACAGT TCCTTACATA AGAGCATTAG ATTGTCTAGG TGAACTGAGT GATGAGAAAG AACTTGCTAA CTTATTAAAG TTAGCAGGGG TTAGTGATAT TAATTTTTAA
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Protein sequence | MDIVMSDSTF FFGEWQINPS ANSLLLGKQV KQLEPKAMDV LLFLCQRAGE VVSSDEIVSH CWPGVDTGDN PLHKIINQLR RALGDSATDP TYIETIRKRG YRTLAEVRFP IGHEATASPQ SWQGGSPFPG LQAYNANYAE VFFGRSEQIS TLLNRISQQI IYGRAFCLVL GPSGSGKSSL INAGVVPNLM KGGGYNGIGV ASFSSLDFAD VSKGQLLTDL ASAMLDWEIN DTPVFEGMSA DTLAVQLIED IQGVINQCTQ ALKAKPFSNP FFALFIDRLE VLLSSPLFSD TERTQFIELL EQLATSKAVI IISACRNDFY PLLVGYPSLM AGKSRGAHFD LAPPTRTELL QMIRLPAVAA NLSWEVDSET AMPLDEMLCS DAASNPDALP MLQYTLQALY LQRSADDKLL VSVYHALGGI EGAIGKNAEQ AISHLSDAEK ASLPRILSLL VTLREDEKSI TSRTARWSQL QSTAETALVQ AMVDSRLFVS HLQNGEPCFS IAHEALLRRW PRATAWISEH SDSLSIKSRL QHLSTRWLSE AKHSAYLLAE GKPLKEAQSL SQNPLFDLDD PETAFIAAST KRANMLRWTR RLTVTLLCVL TLTSIIMSVR SIEAEKLALQ KRLAAEDLLG FMVGDFADKM RGIGRMDLLD GISNKALEYF SDFSNKEDDA HLSFDARFQH GQTLEAMGEV AYSRNKIDEA RSALLAAQEK MLPLLSLQPE NLALLKTLGA NAFWLGQLKY DVSDWAASRP YFEQYLKYSQ TMYALAPEDK DALMELSYAH NTLGSVSMKQ QEFAKAQQDF EESLRLKLLA LAKAPEDSQL IADVADTRSW LASAAVSLGD LSYAVQAHQE IQQQLESQNL EKQPYLLDRL AGSYQNLATL LAYQGHFSQA SSKAESGLAI IIDVLKQDPE NEKWKRLKFY SSFQSIELST STAAPNAQDR LIKVKYELDS DEKFKLSPKY QETLAKYYYT QAKSFFETKN YKNGTINIKL AVKLYYDLSK SFKQNYIYYS DLSIAELLYA SYLKKSKNSD AVIELCKNTK ERLQPLVEKD KDPRFTVPYI RALDCLGELS DEKELANLLK LAGVSDINF
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