| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1362 |
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| Symbol | |
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| ID | 5753091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | + |
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| Start bp | 1627088 |
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| End bp | 1630135 |
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| Gene Length | 3048 bp |
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| Protein Length | 1015 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641287633 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001553797 |
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| Protein GI | 160874481 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.595031 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAG GTATTCTCTT TCCGTTAGTG CAAAATGCGG CTTTGCTGCT GGCGTTGGTA
TTTTTGTACG ACGTGATCCC TAAAAAGCAT CAGCGGCAGT ATTTCTTACT GTGGCGTATC
ATTATTGGGA TGCTCATCGG TGGTATTGGT ATCACAATCA TGAGCACGCC TTGGATATAT
CAACCGGGCG TTTTTTTCGA TACTCGCTCG GTTATCCTCT GTATTTCAGG CCTCTTTTTC
GGTGGTTTGC CAACCTTTAT TGCTGTCGTG ATGACGGCGC TATATCGCAT CAGTATTGGT
GGCGCTGGGA TGTGGATTGG CGTCGGCGTG ATAGTGTCAT CCGGGTTAAT TGGGGTGATC
TGGCGTCAAT ATCGTAAATC CTATTTAGCG AACATTTCAG GTGGAGAAAT CTTTCTCTTT
GCCTATGCCG TCCATATCGT AATGCTGCTG TGGTTTGTAT TTTTACCCAA TGGCATAGGA
ATGCCCTTGC TTGAACAAGT CACCCTACCT GTGCTCACCA TTTTCCCCAT TGCGACTTGG
CTACTGAGCC GCCTGTTGTC ACGGCGTTTT GAGTTAGAAC GTGATGAACA AATTCGTCTA
CAGGACGATT TTCTATTTCG CAGTCAATTC AACGCGGGCA ACATTGGTAT TGCGATAACG
GGGATTGACC AAAAGTGGAT AAAGGTGAAT CCACGTTTAT GCCAAATGCT CAAATATTCA
GAGGCTGAAT TGCTGCGGAT GACGTGGGCG CAAATCACCC ATCCCGATGA TTTAGAAACC
GATGCGCTGA AATTTGAGCT TATGTTACAA GGCGATATCG ATAATTACGA GATGGATAAG
CGTTTTATCG TTAAAGACGG CAGCGTGGTT TACACCCATA TGACAGTCGC CTGCAAACGG
GGGGGCAATA ACGCCGTGTT GCTTGTTATT GCTGGATATT TAGATATTAC TGCCCAAGCC
TTTGCCGACC AAGAGGTACT TGCTAGTCGT GAGCAACTCG AACTGGTGCT GAGCAGTAGC
GATCTTGGGG TATGGGATTG GGATATTCGT CATGATCGTA TCGAACGTAA CGCCCGCAGC
GCCGATATTC TCGGCTGCGA TGTGGATATG CTCAACGCCA ACAGTCGCCA ATGGATGGAC
GCGATTGTCG CCGAAGATAG GCCTAAAGTG TTGCACTCGA TTGAGGCCCA TATTCGCGGC
GAAACGGCGC AACATAAGAT GGAATATCGC CTAAATACAC TCAATCGCAA AGTGCGCTGG
ATTTTAGACA CAGGTAAAGT GGTGAGCCGT GACGCCAACG ATAATGCCCT ACGGATGTGC
GGAACCTATA CCGATATTAC CGATGCAAAA CTTATCGAAG AATCATTGAA ATTGTCGGCG
CTGGTATACG ACAACAGCTC AGAAGCCATG AGTGTACTCG ATGAAAAGGG CGTGATCATT
ACCGTTAATG CCGCCTTTAG TGTGATGACC GGCTATCGTG AATTTGAAGT ACGGGATCAA
CATATTCGGC TGCTTTATTG CGACCTCAAT GGCCGTGATT TTTACATCAA AATGAACAAT
GAGATCCGTG AAAAGGGCCA ATGGCAAGGG GAAATGTGGC AGCGGCGTAA AAATGGTGAG
GAATATGTCA TCTGGTTAAC CATCAATACC ATCAATGACA AAGAAGGCCA TCCCTATCGG
CGGGTGGCGC TGTTTTCTGA CATTACCGAC AAGAAGCAAA ATGAGCATCT TATCTGGAAG
CAAGCCAACT ACGATACGCT GACGGGCTTG CCCAATCGGC GCATGTTATT GGAGTATTTA
AGCAGCGAAG TGAAAAACGC TGACCGCAAT CGCAACCACT TTGCCTTATT GTTCTTGGAC
TTAGATTTCT TTAAAGAAGT GAATGACACC TTAGGCCATG CCATGGGCGA TTTACTGTTG
ATAGAAACTG CGAGCCGCTT GAAATCCTGC GTGCGTGATG CCGACGTCGT GGCCCGTCTT
GGCGGCGATG AATTTACTGT AGTGTTAAGT TCGATGGAAG ATCATAAGGG CATTGAGCGC
GTTGCCGAGA ATATTCTGCG GCGAATTGCC GAGCCCTATG TGCTGGGTGA AGAAACGGCT
TACATCAGCG CCAGTATTGG AATAACTTTG TATCCCGATG ATTCGACCAG TATTGAAGGC
TTACTTAAGC ATGCGGATCA GGCTATGTAT GCGGCGAAAG ATCAAGGCCG CAATCGTTTC
AACTATTTCA CCCCATCGAT GCAGGAATAC GCCAAATACC GCATGCGCTT GATCCAAGAT
TTGCGTCAAG CGGTCGCCAA TAAAGAATTT GAACTGCATT ATCAGCCGAT TGTTGCTTTA
GCGACGGGGG AAGTGACTAA GGCCGAAGCC TTAATCCGCT GGCACCATGC CGAGCGTGGC
GCTGTGTCAC CCGCCGAGTT TATTCCGGTG GCGGAAGACA CGGGTTTGAT AGTTGAAATC
GGTAATTGGG TGTTTGAGCA AGCCGCGCGT CAAAGTGCGG CGTGGCGCCA CGAGTTAGGG
GTTGAAATCC AAATCAGCGT TAACAAATCC CCAATCCAAT TTCGCGATGA AGGCACGCTG
CTCAATGATT GGTTGAAGTT ATTGCAAGAT CTCAATATCA CGGGCGCGGG CGTGTGCGTT
GAAATTACCG AAGGCTTGTT ATTGGACGCC AGTATGGGTG TGACCGAAAA ACTACTGGCC
TACCGCGATG CGGGCGTGCA AGTGTCGTTG GACGATTTTG GTACTGGCTA CTCGTCACTC
GCCTATCTGA AAAAGTTTGA TATCGATTAT CTTAAAATTG ATCAATCTTT TACCCGCCAT
ATTGATACCG ATTCAAACGA TCAAATTCTC TGTGAGGCGA TAATCGTGAT GGCCCACAAG
TTGGGGATGA AAGTGATTGC CGAAGGTGTC GAAACCGAGG CGCAGCGCCA AGTGTTATTG
GCGGCAGGTT GTGACTACGG CCAAGGTTAC TTGTTCTCAA GACCTGTGCC TGCCGCTGAA
TTTACCCAAA AATACCTGCA GGATCCGCCG TTAGTCTCCC GTGTCTGA
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| Protein sequence | MDKGILFPLV QNAALLLALV FLYDVIPKKH QRQYFLLWRI IIGMLIGGIG ITIMSTPWIY
QPGVFFDTRS VILCISGLFF GGLPTFIAVV MTALYRISIG GAGMWIGVGV IVSSGLIGVI
WRQYRKSYLA NISGGEIFLF AYAVHIVMLL WFVFLPNGIG MPLLEQVTLP VLTIFPIATW
LLSRLLSRRF ELERDEQIRL QDDFLFRSQF NAGNIGIAIT GIDQKWIKVN PRLCQMLKYS
EAELLRMTWA QITHPDDLET DALKFELMLQ GDIDNYEMDK RFIVKDGSVV YTHMTVACKR
GGNNAVLLVI AGYLDITAQA FADQEVLASR EQLELVLSSS DLGVWDWDIR HDRIERNARS
ADILGCDVDM LNANSRQWMD AIVAEDRPKV LHSIEAHIRG ETAQHKMEYR LNTLNRKVRW
ILDTGKVVSR DANDNALRMC GTYTDITDAK LIEESLKLSA LVYDNSSEAM SVLDEKGVII
TVNAAFSVMT GYREFEVRDQ HIRLLYCDLN GRDFYIKMNN EIREKGQWQG EMWQRRKNGE
EYVIWLTINT INDKEGHPYR RVALFSDITD KKQNEHLIWK QANYDTLTGL PNRRMLLEYL
SSEVKNADRN RNHFALLFLD LDFFKEVNDT LGHAMGDLLL IETASRLKSC VRDADVVARL
GGDEFTVVLS SMEDHKGIER VAENILRRIA EPYVLGEETA YISASIGITL YPDDSTSIEG
LLKHADQAMY AAKDQGRNRF NYFTPSMQEY AKYRMRLIQD LRQAVANKEF ELHYQPIVAL
ATGEVTKAEA LIRWHHAERG AVSPAEFIPV AEDTGLIVEI GNWVFEQAAR QSAAWRHELG
VEIQISVNKS PIQFRDEGTL LNDWLKLLQD LNITGAGVCV EITEGLLLDA SMGVTEKLLA
YRDAGVQVSL DDFGTGYSSL AYLKKFDIDY LKIDQSFTRH IDTDSNDQIL CEAIIVMAHK
LGMKVIAEGV ETEAQRQVLL AAGCDYGQGY LFSRPVPAAE FTQKYLQDPP LVSRV
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