| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1222 |
|---|
| Symbol | |
|---|
| ID | 5752950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 1458171 |
|---|
| End bp | 1459895 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641287492 |
|---|
| Product | DNA primase |
|---|
| Protein accession | YP_001553657 |
|---|
| Protein GI | 160874341 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0358] DNA primase (bacterial type) |
|---|
| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0573251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.615941 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATAC CTCGTGATTT TATCAATGAG CTAATCGCTC GCACTGACAT AGTCGAACTT
ATCGATCGTA AGGTGCCCTT GAAAAAGGCG GGTAAGAACT ACTCGGCCTG TTGTCCTTTT
CATAGCGAAA AATCACCTTC GTTTACCGTC AGCCGTGATA AACAGTTCTA TCATTGCTTT
GGCTGCGGTG CTCACGGCAA CGCCATCGAT TTTGTGATGG AGTATGACCG ACTCGATTTT
ATTGATGCCA TTGAAGATTT GGCGGGCCAG CTTGGATTAG AGGTTCCCAG AGAACAAGGC
ACAGGCAAGC GACATGATGA CGGTTTAAGT CGTGACTTAT ACCAACTCAT GGAAGAAGCG
AGCCTTTACT TTCAAAACCA ACTTAGACAA CACCAAGATA AACAAAAAGT TATCGATTAT
CTTGCCTATC GCGGTTTATC CGATGATGTA GTCGAACATT TTGGTATTGG CTTTGCGCCA
GACGGTTGGG ACGGCTTATT GGGCCGCTAT CGTCAGAATC AAGATGCGCA GGATAAGTTA
CTGACTGCGG GAATGTTAAT TAGCAACGAC AGTGGGAAAC GTTACGACAG ATTTCGTGAC
CGCCTCATGT TTCCTATCCG CGACAGACGC GGACGAGTCA TTGGTTTTGG TGGCAGAGTT
TTAGGTGATG GCACACCCAA ATACTTGAAT TCTCCAGAAA CGCCCATATT TCATAAGGGC
AATGAGCTTT ATGGTCTCTA TGAACTAAAG CAACGCTATC GCGATCCTGA CAAAGTACTG
ATCGTTGAAG GCTATATGGA TGTGGTGGCG TTGGCGCAAT TTGGCGTCGA TTATGCTGTA
GCGTCATTAG GCACCTCGAC GACGGCGGAG CAATTTCAGC TTTTGCTGCG CAGCGCCAAA
GAAGTGATTT GCTGTTACGA CGGCGACAGA GCGGGTACTG AAGCGGCTTG GCGTGCCTTA
GAAACGGCAT TGCCATTATT AAAGCCAGGC GATCAAGTGC GATTTATGTT CCTGCCTCAG
GCCGAAGATC CTGATTCTAT GGTACGTAAG ATTGGTAAAG ATGCATTTGA AACCTTAATG
GTTTCAGCCA TTGCACTACC CGAGTTTCTA TTTGATACGT TAGCGACAAA ATACGGTACA
GATAAAGGCA ACTTAGCGAA ACAAGCTTTT ATCTTAATTG AAAAAATTCA AGACACTGTG
CTGCAAAATT TACTACTTGA GAACTTAGCT CACAAGTTAG GAATGAACAG CTCAGAAGAT
ATGAAAAAGA AGCTAGGCTT TAGCGTGAAA CAAGCTAAAC CAATGGCAAA TAAAGGATTA
AAAGGACGCG GTACACCATT GCGACTCGCC ATCGCACTGC TAGTACAACA TCCTAAACTG
GGTATGGGCT TACCCCCACA ACCCGCACTC GCCCACTTGC AGATGCCAGG CATAGAATTG
CTGCCACTGT TATTGGAGAT GACTCGAGAG CAAACGTTAA ACAGCGCACA ACTACTTGAA
CAATTCAGAG AGCACCCTTA CAGCGGCACT CTACATAAAT TGGCCCAATG GGACCATCAA
GTGGCGGATG AAAACTTGCT CGAAAAGTTT AAACAAACCC TGGTTTGGTT GAACAATCAA
TATATTGAAC AACGATATCA GGAATTGAGT CTAAAACAGA CTCATACTAA AGAAGAGAAG
ATGCAGCTCT CGAAGCTGAT CTCAGTCATG AAAGGGTTAA ACTGA
|
|---|
| Protein sequence | MAIPRDFINE LIARTDIVEL IDRKVPLKKA GKNYSACCPF HSEKSPSFTV SRDKQFYHCF
GCGAHGNAID FVMEYDRLDF IDAIEDLAGQ LGLEVPREQG TGKRHDDGLS RDLYQLMEEA
SLYFQNQLRQ HQDKQKVIDY LAYRGLSDDV VEHFGIGFAP DGWDGLLGRY RQNQDAQDKL
LTAGMLISND SGKRYDRFRD RLMFPIRDRR GRVIGFGGRV LGDGTPKYLN SPETPIFHKG
NELYGLYELK QRYRDPDKVL IVEGYMDVVA LAQFGVDYAV ASLGTSTTAE QFQLLLRSAK
EVICCYDGDR AGTEAAWRAL ETALPLLKPG DQVRFMFLPQ AEDPDSMVRK IGKDAFETLM
VSAIALPEFL FDTLATKYGT DKGNLAKQAF ILIEKIQDTV LQNLLLENLA HKLGMNSSED
MKKKLGFSVK QAKPMANKGL KGRGTPLRLA IALLVQHPKL GMGLPPQPAL AHLQMPGIEL
LPLLLEMTRE QTLNSAQLLE QFREHPYSGT LHKLAQWDHQ VADENLLEKF KQTLVWLNNQ
YIEQRYQELS LKQTHTKEEK MQLSKLISVM KGLN
|
|---|
| |