| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1213 |
|---|
| Symbol | |
|---|
| ID | 5752940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 1440433 |
|---|
| End bp | 1443429 |
|---|
| Gene Length | 2997 bp |
|---|
| Protein Length | 998 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641287482 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_001553648 |
|---|
| Protein GI | 160874332 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0027404 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.164477 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTTA GAACATTTAG AAAAACCAGA TTGGCCACTA GCCTTTCGCT AGTCTTAGGC
GTGGGCGCTA TCATGCCCGC CTATGCCGCC GATACTGACA AAAAAGAAGA AAATATTGAA
GTTATTCAAG TAACAGGTAT CCGCGGTAGT TTAGTCCGTT CGATGGACGT AAAACGCGGC
TCAGAAGGCA TTGTTGATGC AATTAACGCC GAAGATATCG GTAAATTCCC CGACAGTAAC
TTAGCTGAAT CGCTACAACG TATTTCTGGC GTATCTATCG ACCGTCAAAA CGGTGAAGGT
AGCCGAGTGT CGGTCCGTGG TTTTGGTGCC GATCAAAACT TAGTACTGTT AAACGGACGT
CAAATGCCAG TCACCACTGG CTCTCGCTCA TTCGACTTTG CCAACATAGC GTCAGAAGCC
ATCAGTGCGG TTGAAGTGGA GAAAACCGCT AAGGCGGAAA ATCCAACGGG CGGTATTGGC
GCAACGATCA ATGTGCTCAC CCATAGACCG CTAAGCTCGC CAGGCATGAA GGCCACTTTC
GGTGCAAAGG CCGTTGATGA CTCATCCACG GATAAAGGCT CTACCACACC AGAGCTTTCT
GGCTTGTACT CAAATACCTT TGCCGATGAT AAATTTGGGA TTTCTATTTC AGGTAGCTAT
CAAGAAAGGG AAAGTGGTAA TCAACAAGCC CAAGTCGGTA CCGGTTGGCG CAGCTTCCCA
GGTATCGTTG ACCAAGATTA CAGCGGCCCC AACGCAGAAT GGGGCGGCGT TCCTAAAAAC
GACAATCAAG TCAATCGCCC TGGCGATGAT GACGTGTATA GCGTGCCACA AACCACGATT
TACCGTTTTG AAGAACAACA ACGCAAACGC ACCAACGGTC AATTAGTGCT GCAATACGAG
CCAATTGATT CGCTGCGCGC AACGCTTGAT TACACTTACA TGCGTAACGA CATCGATACT
CAAACGCACG ACGTCTCGGC ATGGTTCAAC TTTGTGCCGT CCCAAGAAAA TATTTGGAGT
GATGGCCCAG TTTCATCACC ACTCGTTTAT TCAGAAACCT ACGATGCACC CGCCGACCTT
TCAATGGCTG CTGGCGATTT CGGCACCCGC GACCAAAGTG GTTCACTGGG TTTTAACTTA
GCTTGGGAAG CCAGTGATAA TCTGACATTA AACTTGGATT ACCATAACTC CTACGCCGAA
CGTACGCCTA ACAATGTCAA TGGCAGTACG AGCAACCTCA GTACCGCCGC CTTTATTCGT
ACCAGTGCAG CGACCGATTT TAGCGGTGAT GTCCCAGTAC TCGCCGTTGG TGGTGGAAAT
GCGGTTCGCC CAGAAGATAT GCGCGTGACA GGTTCAACCT TTACCAATGC CGTCAATCGC
TCCGAAATCG AACAGCTGCA AATGTCGGGT AAATATGATT TAGCCGAAGC AGGCAGTATC
GATTTTGGTA TTGCGATGTC AGACGTGAAT AACCACTCCC AACAGGTTGA TATTCAACGT
AACGACTGGG GTGGCGTTGG TGCAGCGGGC GATTTAGACG CAGCTTGGTT CCCAACCAGT
TCAGTTATCG ATAAATTCGA TGGTTCAAAA GGTAATTTTG CAGGTTATAA CGGTAATGCA
TCGACAGATC CGCTAAACAC TATGTTCCTT TGGGACTTTG CGGCAGTTCG TGCCCGTGCA
GCAGAACTCT ATGCAACGAG CATAGTGGGT GATTGTGGTA ATGGCTTCTG CCCTTCTACC
GATTACTCTA AAGGCACAGA CCGTTTCACT GAAGAAAAAT CTCAATCAGC CTATATCCAA
TACAACTTCG CCAGCGAAAT TGCCAACATG CCCTATGACG TGCATTTCGG CTTACGCTAC
GAAAAAACAG ATGTTGAATC GACTTCGGTT GTTTCCTCTT ATGATACAGC CACTTGGATT
GCAGAGTCTG AAATCGCCCT AACGAGTTCA GTGGATAATA ATCGCGTTTA TCAAACTCAA
AAAGGGGATT ACGATTACCT GCTACCCAGT TTCAATTTTA ATATTGAAAT GCTGGAAGAT
GTGTTCGTCC GCGCCGCCTT TAGCCAAACA ATTGGCCGTC CTGATTACAC CTCGATTCAA
GGTGGCACCA CAGTAGGGAC GCTTGCCTAT CGTAACGGTG GTAGCGGCTC GGCGGGTAAT
CCAAGTCTGT TACCACTCGA GTCAACAAAC TATGACTTGT CGACAGAATG GTATTACAAC
GATGCCAGTT ACGTCTCAAT TGGTTACTTC CGTAAAGATG TGACTAATTT TATCAGCAGT
AATCCTGAAA ACTCAGACAT CTACAACATT CCGGATCCAG CACACGGTAA ATATGTTGAT
GAAGCCATTG CGGCAGGTGC CACCACTGCG ATTCAACAAC GCCAATGGAT TTATGACAAA
TACGGTGCAA CCGATCCAAA TGTGAAGATC AATCCTGATA ACGGCAATAT CGAGATTACC
GGTAACCCAG GTGATCCTTC GTTAAACTTC CTCATTACTA ACCCCACTAA CAGTGATTTG
AGTAATGTGA TTGATGGTTG GGAGTTTTCT ATCCAGCACT TCTTTGGTGA GTCAGGATTT
GGTATCCAAG CCAACTACAC TATGGTGGAT GCGGGGGACA GCTATGATAA CACTAACTTA
GGTCGCCCTG GTGATGCGAC CCAGAACGTG ATTTTAGGGA TCAGCGATAC CGCAAACTTG
GTCGGTATCT ATGAAAACTA TGGTTTCTCG GCCCGTATCG CCTATAACTG GCGTGATGAG
TTCTTAAACT CAACAGGTCA GGATACTGGC TCTAACCCTA AATACACCGA AGCTTATTCG
CAGGTGGACT TTAACATAGG CTACGACGTT GAAGCAGTTG AAGGTTTGAC CATCTTCATC
GAAGGCTTAA ACATCACCAA TGAAGCCACC CGTGTACACG GCCGTGCGAC GGAACAAGTC
CTTAACTACA CCCAGACGGG TGCGCGTTAC AGTATAGGCG CACGTTACAC TTTCTAG
|
|---|
| Protein sequence | MELRTFRKTR LATSLSLVLG VGAIMPAYAA DTDKKEENIE VIQVTGIRGS LVRSMDVKRG
SEGIVDAINA EDIGKFPDSN LAESLQRISG VSIDRQNGEG SRVSVRGFGA DQNLVLLNGR
QMPVTTGSRS FDFANIASEA ISAVEVEKTA KAENPTGGIG ATINVLTHRP LSSPGMKATF
GAKAVDDSST DKGSTTPELS GLYSNTFADD KFGISISGSY QERESGNQQA QVGTGWRSFP
GIVDQDYSGP NAEWGGVPKN DNQVNRPGDD DVYSVPQTTI YRFEEQQRKR TNGQLVLQYE
PIDSLRATLD YTYMRNDIDT QTHDVSAWFN FVPSQENIWS DGPVSSPLVY SETYDAPADL
SMAAGDFGTR DQSGSLGFNL AWEASDNLTL NLDYHNSYAE RTPNNVNGST SNLSTAAFIR
TSAATDFSGD VPVLAVGGGN AVRPEDMRVT GSTFTNAVNR SEIEQLQMSG KYDLAEAGSI
DFGIAMSDVN NHSQQVDIQR NDWGGVGAAG DLDAAWFPTS SVIDKFDGSK GNFAGYNGNA
STDPLNTMFL WDFAAVRARA AELYATSIVG DCGNGFCPST DYSKGTDRFT EEKSQSAYIQ
YNFASEIANM PYDVHFGLRY EKTDVESTSV VSSYDTATWI AESEIALTSS VDNNRVYQTQ
KGDYDYLLPS FNFNIEMLED VFVRAAFSQT IGRPDYTSIQ GGTTVGTLAY RNGGSGSAGN
PSLLPLESTN YDLSTEWYYN DASYVSIGYF RKDVTNFISS NPENSDIYNI PDPAHGKYVD
EAIAAGATTA IQQRQWIYDK YGATDPNVKI NPDNGNIEIT GNPGDPSLNF LITNPTNSDL
SNVIDGWEFS IQHFFGESGF GIQANYTMVD AGDSYDNTNL GRPGDATQNV ILGISDTANL
VGIYENYGFS ARIAYNWRDE FLNSTGQDTG SNPKYTEAYS QVDFNIGYDV EAVEGLTIFI
EGLNITNEAT RVHGRATEQV LNYTQTGARY SIGARYTF
|
|---|
| |