| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1163 |
|---|
| Symbol | |
|---|
| ID | 5752890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 1376396 |
|---|
| End bp | 1379902 |
|---|
| Gene Length | 3507 bp |
|---|
| Protein Length | 1168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641287433 |
|---|
| Product | type IV pilin biogenesis protein, putative |
|---|
| Protein accession | YP_001553599 |
|---|
| Protein GI | 160874283 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.61986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.837948 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTATTA AAGAGCTGGC TTGTTCTACA CTACTAGTAC TGACTTTTGT GTCGGCTTAT
TCCTTTGGTG ATGATACTGA ATTGTATGTA AAAGAGTCGA CGACTCGAAC TGGCGCAAGA
CCGAAAGTAC TTGTCATATT TGATAACTCG GGAAGTATGT CGACTGAAGA AATTACTCAG
GTTGTAGATT ATGACCCTAA CTATGACTAC CCAGCTGTAA GTGGTTCTGG GTATAGTGAT
ACTCTTATTT ATTATGCTGT TGGCGGTGGA GGATTACCCA CCCCTGATAC TAGCTCTGAT
AAGCGTTATT TTAAAGCAAG TTTAAATGGA TGTAGTCAAA GCAAAGCTGC ATTAGCAGAG
TTTGGTCGTT TTACGGGGTA TATAAGGGAG TTCACATCAA GTGGTACTAC TGGTGTTTGG
AAAGAACTGC CTGAAACAGA TGGGCGTAAT ATTTCCGTAA TAGATTGTTG GGAAGATATT
TCTCAAGTAG ATCCTAATAA CTCATCTTCT TACTATGATG GATTTCCAGC AAATGGATTA
ACTACTGGAT CTGGTAGGAA AAAAAAGGCA TATCCATATT TTATTTCATC CTCCCCCAGC
AGCACATGGG CTGATGCTTT AGCCGCAGCG AAAAATACGG ACTTTGGCGT TGGGCAGCCA
GTAACTTTTT ACGCTGACAA CTATTTAAGA TGGTATTGGT TATCTAAAGC AGGGAAATTA
CCAACAGTAA AAGTTTCAAG ACTAGAAATT GCGAAGAAAG CGATTTCTAA TATTATTAGT
TCAACTCCAA CAGTGGATTT TGGACTTGCT GTATTTAACT ATAATTATCC AAATGAAGGC
AACCGAGACG GTGGTCGAAT TGTCTCTGGC ATTACTCAGA TGACAGATAG TACGCGTGCG
AGTTTACTAA CTACAATTGA TAATTTGTTG GCAAAAACAA ATACACCACT ATGTGAGACT
ATGTATGAAG CTTACCGTTA CTTTGCAGGT AAGGGAGTTA AATATGGTCA TGGTGATACT
GATTATGGCT CGTATGTAGG AAATAAGCCG CCTTATGATA GTTTAGTGGA GAAGGGGGGG
AGCTACGAGA GTCCATTTAA AGTATGCACG GATATTGCTT ATGTTATTTA TGTCACTGAT
GGCGCACCTA CCGTTGATAA AAGTGCTAAT AATGATGTTA TAAGCTTAAC CTCAACAGGA
AGTAAAGATG GAGATTATTC TTCATTTTCT AAAAATTTAG ATACGGCAAG TTATTTACCA
GCCTTGGCTA GTTATATGTT TAATAATGAT TTAATCAATA AGCTGGATAG CTCAAATACT
GAGCAAATGC AAAATGTTCG GACTTATACT ATTGGTTTTA GTAAAGGTGC AGAAGATGCC
GCGCCTTTAC TCGCTGAGAC AGCAAAAAGA GGTGGTGGTT TATATTTTGC AGCTCAGAAC
AGTATTGAAC TACAGAATGC TCTGAATGAT GCTTTATCGA ATATTTTGAA TATTGATTCA
AGCTTCACCT CTCCTAGTAT TGCCAGCAAT AACTTCGACC GAACCCAGAC ATTTGACGCA
GCTTATTATG CGATGTTTTT ACCTGGCAAA GGACCTCGTT GGAGTGGTAA TTTAAAAAAA
TTAAAAGTGA CAGCTGATGG AACACTGGTT GATAGTAAAG GTAGTGCCGC TATCGCCGAT
AACGGAAATA TTAAAGATGG CGCCTGTACT ATATGGTCAA ACTGCGATGC GCAAAAGGAC
GGCAATAAAG TTGAGGTAGG AGGCGTTGCA GCGCAAATAA GGACACAATC GGTAAGAAAA
ATTGTAAGTG ACTTAGGGGT TGGGTCAAGT TTAACGCCAT TAACGCTGGC TAATGCACAA
AGTGCGGCAG GTGGTGATAC CGCGTTAGCT AGTTACATGA GAACTAGTGT AGATGAGCTT
GCAAATACAT TCGATTGGCT TAAAGGGATA GATGTTGATG ACGATAACAA AGATGGTAGC
ACTACGGATA AACGTAATGA TGTTATGGGG GATCCACTTC ACTCTAAGCC GCTAGCTCTT
AATTTTGGTT CGTCTACAGC AACTGATATT CGTATTATGC TAGGCACTAA TCAAGGTGTT
TTGCATATGT TTAAAGACGA GGGAGACTCT GTATCAGAAA CTTGGGGATT TATTCCTTAT
GAATTATTGC CTAATTTAAC AGAACTAAGG AGTAATGATC CTTCAGGTGT GCACACTGTA
TATGGGATGG ATTCATCACC TGTCGCTTAC ACTGAGATGG ATGATACAGG TAAAGTGATT
AAAGCATGGG TTTATGTCGG CATGCGTCGA GGAGGTTCGT CTTATTATGC CCTTAATGTG
ACAAATCCTG ACAGTCCTAC TTTAATGTGG TCGATTAATC CTTCAACCGA AGGTTTTTCA
GATCTTGGAC AAACATGGTC TGAACCAATA GTGACAAAAA TAGTCGGTTA TGAAAAGCCT
GTACTCATTT TTGGTGGTGG CTATGATACA AGCTTTGATG CCACTCCTTC ATCTGCTCCG
GCTGGCCGTG CAGTGTATAT TGTCGATGCA GAGAAGGGGA CTTTGATTCA TTCATTTGGC
GGTTCTGCCT CTGGTGCAAC AGTACTTTCT GATATTCAGG ATAGTATTCC AAACTCAGTC
GCGATACTTG ATAGTAATAA TGATGGTTAC ACTGATCGAA TTTATGCAAC TGACGTTGGT
GGTAATGTTT GGCGTATGGA TTTGCCCAGT GCTAGCCAGA GTAGTTGGAC CGCATTTAAA
TTTGCAGCAC TAGGAGGAAG CAATAACGAC AATAGACGCT TTTATGCCGA GCCCGTGGTT
GCACAAACGA TGTTTACTAA CCTCGCTGAG GTCAAGGTTA CTAGTGGTAC TGGAACGACA
ACAACCAAAA CCTACCAAAA TGTTCCCTAT GATGCCGTCG TGATAGGCAG TGGTGCCAGA
CCTCATCCTT CTAGTACTAC AGTGAATGAT ATGTTTTTCA CGTTGCAGGA TAGGAATGTG
GTGACTAAAA GTTTTACTGG CAGTGATATT CCAAGCGTGA TTACTATCAA TGATCTTTAT
GATGTGTCTT CTAGCGCACC AGTTTCGGAG ACTGATAATA TTAGCTTTGG CAAAAAACTA
GGCTGGTTTT ATGATTTTTC TGGGTTAGGA GAGAAGAGCT TAACTGCCGC CTTAATTGTG
CAAGGGAAGG TATATTTCAC CTCTTACTCA CCACCTGCAG ATTCAGTTGC CGAAAACGTC
TGTGTAGTTT CTGGATCGGG AAAGCTCTAT GTATTTGATC TTCATAAGGG AACAAGAACC
TTCTCCCAGT TGTATTTTGA GCTTGGTGAG CGAGTACCCG ATACACCTCA AATTGTTATC
CCTGCACCAG AAACGGGTAA GGATCCTTAC ATTTATATTA TTGGAGTGGG TAAGGGTGAG
AAAAACAAAG ATGGTGAATA TAGTGGAACG ATAAATGTGG CCTCTGGTTT AGGGGTGAAT
AAAATTTATT ATCATATAAA TGAATGA
|
|---|
| Protein sequence | MIIKELACST LLVLTFVSAY SFGDDTELYV KESTTRTGAR PKVLVIFDNS GSMSTEEITQ
VVDYDPNYDY PAVSGSGYSD TLIYYAVGGG GLPTPDTSSD KRYFKASLNG CSQSKAALAE
FGRFTGYIRE FTSSGTTGVW KELPETDGRN ISVIDCWEDI SQVDPNNSSS YYDGFPANGL
TTGSGRKKKA YPYFISSSPS STWADALAAA KNTDFGVGQP VTFYADNYLR WYWLSKAGKL
PTVKVSRLEI AKKAISNIIS STPTVDFGLA VFNYNYPNEG NRDGGRIVSG ITQMTDSTRA
SLLTTIDNLL AKTNTPLCET MYEAYRYFAG KGVKYGHGDT DYGSYVGNKP PYDSLVEKGG
SYESPFKVCT DIAYVIYVTD GAPTVDKSAN NDVISLTSTG SKDGDYSSFS KNLDTASYLP
ALASYMFNND LINKLDSSNT EQMQNVRTYT IGFSKGAEDA APLLAETAKR GGGLYFAAQN
SIELQNALND ALSNILNIDS SFTSPSIASN NFDRTQTFDA AYYAMFLPGK GPRWSGNLKK
LKVTADGTLV DSKGSAAIAD NGNIKDGACT IWSNCDAQKD GNKVEVGGVA AQIRTQSVRK
IVSDLGVGSS LTPLTLANAQ SAAGGDTALA SYMRTSVDEL ANTFDWLKGI DVDDDNKDGS
TTDKRNDVMG DPLHSKPLAL NFGSSTATDI RIMLGTNQGV LHMFKDEGDS VSETWGFIPY
ELLPNLTELR SNDPSGVHTV YGMDSSPVAY TEMDDTGKVI KAWVYVGMRR GGSSYYALNV
TNPDSPTLMW SINPSTEGFS DLGQTWSEPI VTKIVGYEKP VLIFGGGYDT SFDATPSSAP
AGRAVYIVDA EKGTLIHSFG GSASGATVLS DIQDSIPNSV AILDSNNDGY TDRIYATDVG
GNVWRMDLPS ASQSSWTAFK FAALGGSNND NRRFYAEPVV AQTMFTNLAE VKVTSGTGTT
TTKTYQNVPY DAVVIGSGAR PHPSSTTVND MFFTLQDRNV VTKSFTGSDI PSVITINDLY
DVSSSAPVSE TDNISFGKKL GWFYDFSGLG EKSLTAALIV QGKVYFTSYS PPADSVAENV
CVVSGSGKLY VFDLHKGTRT FSQLYFELGE RVPDTPQIVI PAPETGKDPY IYIIGVGKGE
KNKDGEYSGT INVASGLGVN KIYYHINE
|
|---|
| |