Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_1091 |
Symbol | |
ID | 5752812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | - |
Start bp | 1291040 |
End bp | 1292764 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641287355 |
Product | pseudouridine synthase |
Protein accession | YP_001553527 |
Protein GI | 160874211 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.957867 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAGCTTC AGCCTTCTTG CTTTACCTCT TTCACACAAG CCATTGATGC CTATGCCCTG CCGCAACGTT TTACTTTTCC TTTCTATTAC GAACCGCATC CATTATGCGT GCTTGCAGCC AACGAATTAC AACACCACCT CGAGACTCAG CACGACTGGC AACATAACTT TGGCCTAACG GGTGAGTTAA CTGGCGCCAT TGGCAAGATG TTCGGCGTAT TGCTGGTACA AAATCCGCAA GGTGAAGTCG GCTATTTATC TGCATTTTCG GGCAAATTAG CCGAGCAAAA CCATTGGCCA CGCTTTGTTC CACCTGTGTT TGATATGCTG GCTAAGGACA ATTTTTTCCA CGCCGAAAAT CTGCAAATCA ACCAAATTAA CGAGCAGCTG TTTGCAGTAG AAAACCATCC CGACATTCCG AGGCTATCAA CCGAGCTAGA AACTGAACAA GCTCAAGCGC AAGCCGAACT TGACGCCCAC AGACAAGTGA TGATCGATAG CCGCCAATCT CGCAAGGCGC AGCGTAATCA ACTCGCAGCC CAATTGGCTG CCAATCCGAC TGATGAGACC TTGCGTGAAA ACGCAATAAC TGAAGCAAAG CTCAGCCAGG AAAGCATCAG TGAAAAGAAT CAGTTAAGAG ATATTAAACG CTATTGGGAT GAACGTATTC ATACCATCAG CCAAGCGCTA AGCCAACTGA CAGATGAGCG CGATGCGTTA CGACAACAGC GTAAGCGGCT CTCGGCGGCG CTGCAGCAAA AGCTGTTTGA GCAGTATCGA TTTCTCAATG TTAAAGGCAC AGAAAAGAGT CTGAACGGCA TATTTAATGG CACGGTTGAG TTAACCCCGC CCGCAGGCTC GGGCGAATGT GCCGCGCCTA AGTTGTTACA TTACGCCTTT AAACATGACC TTAAACCATT GGCGATTGCC GAGTTTTGGT GGGGCGCGCC GCCAAAATCA GAAATCCGCC AGCATAAGCA GTTTTATCCC GCCTGCCTGC GAAAATGCCA ACCTATTCTT GGACATATGC TCGAAGGACT CGTGGTTGAT GAGAATCCTC TGCTTACCAA CCCCGCCGAA GGCAAAACCT TAGCCATCCT CTACCAAGAC GATGCGATGG CGATTGTGAA TAAACCCGCC GAGTTTTTAT CCGTGCCCGG CAAAGAAATT GAAGACTCAG TGTATTCGCG TATGCGCCAA ACCTTCCCCC ATACCACAGG GCCACTTATC GTCCATCGAC TCGATATGTC GACCTCGGGA TTAATGGTGA TCGCGCTGAC AAAAGAGGCC CATAAACAGC TGCAAAAACA ATTTATCCAG CGCACTGTGA CTAAACGTTA TGTAGCACTT TTAGCGGGAA TGCCTGCGGT AATGGCAAAT AAGCAGGCGA CGGGTCACAT CTCTTTACCC TTGCGTGGCG ATTTAGACGA TAGACCGAGA CAACTCGTTT GCCACGAGTT TGGTAAAGCA GCCGAAACCC ATTGGGAATT GAGCCAACTT GATGAAATGG CACGTACAGC CCGCGTATAT CTGTATCCAA AAACAGGCAG AACCCATCAA CTCAGAGTTC ACTGCGCCCA CTCAGAGGGG CTAAATACAC CGATTGTCGG TGACGACCTC TACGGCACTC GCGCCAATCG CCTGCATCTG CATGCGGATT TATTGATGCT TCAGCATCCC GTTACCCGTG AACGGATGCG CTTTCAGGTC GATCCTGATT TTTGA
|
Protein sequence | MQLQPSCFTS FTQAIDAYAL PQRFTFPFYY EPHPLCVLAA NELQHHLETQ HDWQHNFGLT GELTGAIGKM FGVLLVQNPQ GEVGYLSAFS GKLAEQNHWP RFVPPVFDML AKDNFFHAEN LQINQINEQL FAVENHPDIP RLSTELETEQ AQAQAELDAH RQVMIDSRQS RKAQRNQLAA QLAANPTDET LRENAITEAK LSQESISEKN QLRDIKRYWD ERIHTISQAL SQLTDERDAL RQQRKRLSAA LQQKLFEQYR FLNVKGTEKS LNGIFNGTVE LTPPAGSGEC AAPKLLHYAF KHDLKPLAIA EFWWGAPPKS EIRQHKQFYP ACLRKCQPIL GHMLEGLVVD ENPLLTNPAE GKTLAILYQD DAMAIVNKPA EFLSVPGKEI EDSVYSRMRQ TFPHTTGPLI VHRLDMSTSG LMVIALTKEA HKQLQKQFIQ RTVTKRYVAL LAGMPAVMAN KQATGHISLP LRGDLDDRPR QLVCHEFGKA AETHWELSQL DEMARTARVY LYPKTGRTHQ LRVHCAHSEG LNTPIVGDDL YGTRANRLHL HADLLMLQHP VTRERMRFQV DPDF
|
| |