| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_0924 |
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| Symbol | |
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| ID | 5752645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | - |
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| Start bp | 1088701 |
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| End bp | 1090425 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641287188 |
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| Product | spermidine synthase |
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| Protein accession | YP_001553360 |
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| Protein GI | 160874044 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.305846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGAAA CCAGCTTAAC CCCCTCGGCG GCTAAACCTA GCCGCCTAGG TTGGTTCGAC
GATGTACTCT TATTGGGCAT CATGGCCGTA TTAGCAGGCT GCGGCTTGAT TTACGAATAT
CTTTTATCCC ACTATGCGGG GCGCATTTTA GGCGCATTAG AAGCCGCCAT CTACACCATG
ATTGGCTTGA TGATAGTCTC CATGGGACTA GGTGCCTTCG CCGCCCGTAA GATCCGTGAT
GCCTTTACCG GTTTTGTGAT CTTAGAACTC ACAGTCGCAC TCTGCGGCTC ACTCGCCATT
TTAATCACAG CGGCGGTGAT TGGTTTCGGC CAACAACTGC CCTTGATGAT TGCCAACACC
TTAGGTTTAC CACCAGATCA ACTGCCCGAA GGCGGCATGA TAGGCTCGCT GCAAAAACTC
AGCGAATACT TGCCCTATGT GTGGGGCGTG TTACTGGGCC TGATGATTGG TATGGAAATC
CCACTGATCG CCAGAGTGCG CCAATCACTC TCTGACGAGC ATTTGCTGCA CAATGCGGGG
ACAATTTACG GCGCCGATTA CATAGGCGCT GGCATAGGGG CCGCCATTTG GGTGGGCTTT
ATGCTCGCCA TCGATATCCA ACTTGCCGCC GCCTTAACCG CCAGTTTCAA CCTGTTGGCG
GGCTTTGTGT TTATCTGGCG CTTTTGGCCT AAAATCCGCC GCCCTAAACT GCTTTTAACT
GGGCATTTTA TCGTGACTGG CATTTTACTC GTGTTAGCCA TCCACGGCCC ACGCTGGGAG
CAAGAATTTA ATAATTTGCT CTATAAAGAC AAAGTGGTTT ACGCCAAGGC GACACGTTTC
CAACAGTTGA CCTTCACCGA GCGACTGCGC GGTAACGGTC TGTCGCCCGT TTATGCGTTA
TACATCAATG GTCGCTTACA GTTTTCTAGC ATAGACGAAC ACATTTACCA TGCGTTTCTC
GTGCACCCCA CACTCGCCGC CAGCGCCCGT CATAACAAGG TGTTGATCAT TGGTGGCGGC
GATGGACTCG GTCTTAAGCA AGTGCTGCGC TGGGAGCCTG AGCAAGTGAC GCTGCTCGAT
CTCGATGTCG GCCTAGTGCA ATTGTTTAAG TCGCCTGATA CAGATATGCC CGAGCGTTTG
AGCCGCGCCA TGTTGACGCT CAACGGCAAT GCGCTAAACG ATCCCCGTGT CACTGTGATC
AACGACGATG CATTTAATGG CGTCGATAAG CTGATTGCCA CAGGCGTGAA ATACGATGCG
ATTATCGTGG ACTTGCCCGA TCCGAGCCAT CCCGATCTTA ATAAGCTGTA TTCGGATTAT
TTCTACCGTA AATTAAAGGA ACTTATGAGT AGTGATGGTG CTCTGACTGT ACAGTCAACA
TCGCCTTACC ATGCTCCTAA GGCCTTTATT TCGGTAGCAA AAACCTTGGC ATTGGCAGGA
TTTGACGTCA AACAGTACCA CCATAATGTG CCCAGTTTTG GCGAATGGGG CTGGAGTATC
GCCACCGCAG GCGGACTCGA TGCACAACAC AGATTAGCTA AGTTAACTGA GCTGCCCATC
AAAGATGACT GGCTCACCTT AGGTTTAGTG GATGGCGCCT TTGAGTTTCC AGCAAATTTT
TATCAAGATG CCGCCAAAAT AAAACCCAAT GAATTGGGTT CGTTGCAGCT GTATCACTAC
CATTTACAAG ATTGGTCCGA GAATCAGGGA CTGAATCTTT TTTAA
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| Protein sequence | MQETSLTPSA AKPSRLGWFD DVLLLGIMAV LAGCGLIYEY LLSHYAGRIL GALEAAIYTM
IGLMIVSMGL GAFAARKIRD AFTGFVILEL TVALCGSLAI LITAAVIGFG QQLPLMIANT
LGLPPDQLPE GGMIGSLQKL SEYLPYVWGV LLGLMIGMEI PLIARVRQSL SDEHLLHNAG
TIYGADYIGA GIGAAIWVGF MLAIDIQLAA ALTASFNLLA GFVFIWRFWP KIRRPKLLLT
GHFIVTGILL VLAIHGPRWE QEFNNLLYKD KVVYAKATRF QQLTFTERLR GNGLSPVYAL
YINGRLQFSS IDEHIYHAFL VHPTLAASAR HNKVLIIGGG DGLGLKQVLR WEPEQVTLLD
LDVGLVQLFK SPDTDMPERL SRAMLTLNGN ALNDPRVTVI NDDAFNGVDK LIATGVKYDA
IIVDLPDPSH PDLNKLYSDY FYRKLKELMS SDGALTVQST SPYHAPKAFI SVAKTLALAG
FDVKQYHHNV PSFGEWGWSI ATAGGLDAQH RLAKLTELPI KDDWLTLGLV DGAFEFPANF
YQDAAKIKPN ELGSLQLYHY HLQDWSENQG LNLF
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