| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_0862 |
|---|
| Symbol | |
|---|
| ID | 5752583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 1017424 |
|---|
| End bp | 1017993 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641287127 |
|---|
| Product | prepilin-type cleavage/methylation-like protein |
|---|
| Protein accession | YP_001553299 |
|---|
| Protein GI | 160873983 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4966] Tfp pilus assembly protein PilW |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATTTCAG CTCATCACAC TCCATGGAGA CAAATTAAAC CCGCCTTAAG ACAATCGGGG
TTTAGCTTAT CCGAACTGAT GATTGCCATG GTATTAGGCC TGATCATCAT GATCGCTGTG
ATCAATTTCT TTGCGCCACT TAAGGCCACC GTTGAGGAAA GTAAACGTCT AGAAAATGCC
GCTGACGCCT TAAGATACGC CACGCTAACG CTCAGTAAAA GCATCAAACA GGCTGATAAC
GTCGCAAATG TATCGGCTAA CGAACTCGTC TTAAGCACGC TCGCCTCTGC AAGCCAACCG
AGTATTAGCT GTTTAGGCCA AAGTAAAACC GCTGATTACA TTGAAACATT TAGCTTTATG
GCACCTAACT TATCCTGCAA CGATGGTGAT GGCGCGCAAA CACTCCTCAC CGGGCTAGAA
GCGGCTCACT TCTCGCAAGC TGGTGAACTC GTCAGTATCA ATCTGAAGCC CTTAGCTTTG
CCGACGCAAT ATGGTCAGGG TATTAGCTTG CAGGTCGCAC TGCGTAAACC CCTTTGGCAA
CAAGCCATTA ATTCACAACA AGTGCCATAG
|
|---|
| Protein sequence | MISAHHTPWR QIKPALRQSG FSLSELMIAM VLGLIIMIAV INFFAPLKAT VEESKRLENA
ADALRYATLT LSKSIKQADN VANVSANELV LSTLASASQP SISCLGQSKT ADYIETFSFM
APNLSCNDGD GAQTLLTGLE AAHFSQAGEL VSINLKPLAL PTQYGQGISL QVALRKPLWQ
QAINSQQVP
|
|---|
| |