| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_0737 |
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| Symbol | |
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| ID | 5752454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | + |
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| Start bp | 885416 |
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| End bp | 887839 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641286999 |
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| Product | ribonuclease R |
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| Protein accession | YP_001553175 |
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| Protein GI | 160873859 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.034125 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00132247 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAAAG ACCCTCATTT TGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGC
CGTGAGTATA TTATCGATTA CTTACGTTCT CAGAAATCAC CTATCACTCG TGACAGTATT
GCCGCGGCGT TAAACATCCA AGAGGAAGAA CAGCTTGAGG CCCTGCGCCG TCGCCTACGT
GCGATGGAAC GCGATGGCGA ACTCGTGTTC ACCCGTGGGC AGAGCTATGG CTTGCCCGAG
AAAATGGATC TTATCCCCGG CACTGTACTC GGACACAGAG AAGGCTTCGG CTTTTTCAAA
CCCGATGAAG GCGGTGATGA CTTATTTATT TCGAACCGCG ATATGCTGAT GTATTTCCAT
GGTGATAAAG TGCTCGCGCA AAAAGCGGGC ACAGATCGTC GTGGTCGCCG CGAAGCGCGT
TTGGTGCGTT TGATCCAGCC GCGCAGTGCC GCGATTGTTG GCCGTTATCA TGTTGATAGC
GGTATGGCAT TTGTCATTGC CGATGATAAG CGTATAACCC AAGAAATCTT AGTCGCGAAT
GAAGATCGCA ACGGCGCCCG TCAAGGCGAT GTGGTTGTGG TTGAATTAAC GCGTCGCCCG
GGTCGTTTTG TTAAGGCTGC GGGTAAAGTG ACTGAAGTGC TTGGTAAGCA AATGGCGCCG
GGGATGGAAA TCGAAATCGC CTTGCGTAAC TACGACTTAC CCCATACTTG GTCACCTGTG
ATCGAGAAGA AACTGCGCCG AATTCCCGAT GAAGTGACCG ACGCCGATAA AGTCGGCCGT
GTAGATTTAC GTCATCTGCC ATTAGTGACT ATCGACGGCG AAGACGCCCG CGATTTTGAC
GATGCCGTGT ATGCGGAGAA AAAAGCCGGT GGCGGCTGGC GTTTATGGGT TGCGATTGCT
GACGTTAGTT ATTATGTTCG CACCGATTCG GCTTTAGATA CCGAAGCGCG TGCCCGTGGT
AACTCAGTGT ATTTCCCATC GCAAGTGATC CCTATGCTGC CGGAGAAAAT CTCCAATGGC
CTATGTTCAC TTAATCCTCA CGTCGACCGT TTATGTATGG TCGCCGAGAT GACAGTGTCT
GCCAAAGGCA AGTTGTCGGG TTATAAGTTT TATCCGGCTG TGATGTATTC CCATGCCCGT
TTCACTTATA CCCAAGTGGC GGAGATGTTA GAAGGCGGTC CAATTGCGCC TGAGCATGAA
GCCTTGTTCC CGCATCTTCA GTGTTTACAG TCATTGTATT TAGCGCTGGA TGAGCAAAGA
GCTGAGCGTG GGGCGATTGC GTTTGAAACC ATGGAAACAC AGTTCATTTT CAATGAGCAG
CGCAAGATTG ATAAAATCGT GCCGCGTGGC CGTAATCAAG CCCATAAAAT CATTGAAGAA
TGCATGATTT TAGCCAACGT TTCTGCAGCT AAATTTGTGA AGAAACACAA AGGCGACGTG
CTGTACCGAG TGCATGAAGC GCCATCTGAG CAAAAGTTGG CGAACTTTAA AGAGTTCCTT
GCTGAGCGTG GTTTGACTAT GCCTGGCGGA CTTGAGCCAA CGCCGTCAGA TTACCAGAAC
GTGATGCTGC AAATTGCCGA CCGTCCCGAT GCTGAACTGA TCCAAGTGAT GTTGCTGCGC
TCTATGCGTC AGGCAATTTA CACCCCAGAT AATGAAGGTC ACTTCGGTCT AGCCTTAGAA
GAATATGCGC ATTTTACCTC GCCCATTCGC CGTTATCCGG ATTTAGTCTT ACATAGAGTT
ATCCGTTATT TACTGGCGAA GGAAAGAGGC GAAGCCACAG AAAAGTGGAC GCAGGATGGT
GGCTACCACT ATCAACTCGA TGAACTCGAC CAATTGGGCG AAGAGTGTTC GACTACAGAG
CGTCGTGCCG ATGAAGCGAC TCGTGATGTT AGCGATTGGC TCAAGTGCGA GTTTATGCAA
GATCACGTCG GCGATACCTT CGAAGCTGTG ATTGCCTCAG TGACGAGCTT TGGTTTGTTC
GTGCGCTTAA ATGAGCTGTT TATCGATGGC TTAGTGCATA TATCAAGCCT AGGTAGCGAT
TACTACCAAT TCGATCCTAT GCGTCAACGT CTTATCGGTG AGCACACTGG CCAAGTCTAT
CAAGTTGGCG ATCCTGTGAC GGTTAAGGTC GCTGCTGTTA ACTTAGATGA CAGACAGATT
GATTTAGTCA TGCTGGGCGA TGACGGCAAA GGTGGCAAGC GTAAAGCCTC TGCCAGTCGT
GATAAGCCGA TGACTGCCCG TGAGCGTGTT AATCGCGAAG GTGCTAAGCA AGGCAAAGCG
GGTAAAACCA CAACTCCTAG CACTAAGGCT GAAGCTGGCA AAGCCAAACC TAAGGCTAAA
GCGGGCACTA AAGCGAAAAA GACAGCAGTA AAAGATCCGG CTAAAAAGCC AAAAGCCGCT
AAGCGGAGCA CGAGAAAGAA ATAA
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| Protein sequence | MIKDPHFERE QDKYENPIPS REYIIDYLRS QKSPITRDSI AAALNIQEEE QLEALRRRLR
AMERDGELVF TRGQSYGLPE KMDLIPGTVL GHREGFGFFK PDEGGDDLFI SNRDMLMYFH
GDKVLAQKAG TDRRGRREAR LVRLIQPRSA AIVGRYHVDS GMAFVIADDK RITQEILVAN
EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSPV
IEKKLRRIPD EVTDADKVGR VDLRHLPLVT IDGEDARDFD DAVYAEKKAG GGWRLWVAIA
DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPHVDR LCMVAEMTVS
AKGKLSGYKF YPAVMYSHAR FTYTQVAEML EGGPIAPEHE ALFPHLQCLQ SLYLALDEQR
AERGAIAFET METQFIFNEQ RKIDKIVPRG RNQAHKIIEE CMILANVSAA KFVKKHKGDV
LYRVHEAPSE QKLANFKEFL AERGLTMPGG LEPTPSDYQN VMLQIADRPD AELIQVMLLR
SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKERG EATEKWTQDG
GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTSFGLF
VRLNELFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI
DLVMLGDDGK GGKRKASASR DKPMTARERV NREGAKQGKA GKTTTPSTKA EAGKAKPKAK
AGTKAKKTAV KDPAKKPKAA KRSTRKK
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