| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_0670 |
|---|
| Symbol | |
|---|
| ID | 5752387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 816994 |
|---|
| End bp | 818361 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641286932 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001553108 |
|---|
| Protein GI | 160873792 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.358402 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACA GACACGGGCT GCTCACCGCG CCAATTGGTC GTGTACTGCT CAACATGAGC
CTCCCCAACT TAATTGGCAT TATGACCATT CTAGGTTTCA GCCTCGCTGA CACTTTTTTT
ATCAGCCAAT TGGGCACCGA AGCCTTAGCC GCCATTAGTT TTACCTTTCC AGTGACCTTA
GTGATCTCTA GCATCGCCAT TGGTATTGGC GCTGGTGTCT CGACTAATTT AGGCCGACTT
ATCGGTTCGG GTAATGCCCA CAAGGCCAAA GTATTCTTGC ATGATGCCTT ATTACTCACC
TTTGGTTTGA TCGCCAGTTT AGCTGCACTG GGTAGCATTT TTATCGAGCC ACTGTTTCGC
TTACTTGGGG CAAACGATGA CAGCTTGCCG CTGATCCACG ACTATATGAT TTACTGGTAT
GTCGGTGCGC CGCTGCTGGT GTTGTTGATG GTGGGCAATC AGGGCTTACG TTCCACTGGC
GATACCCGCT CGCCGGCGAT GATTATGGCG CTGGCGGCAA TCATCAATCT TATCCTCGAT
CCGTTGTTGA TCTTCGGTAT TGGGCCGTTT CCACGTTTAG AAATTCAAGG TGCCGCGATT
GCAACCCTGT TCGCTTGGTT GGTGGCGTTA TCTTTGTCGG GATATTTGTT GATTGTCAGG
CGCAAAATGC TTGAATGGAC AGTGTTTGAC ATAGACAGAA TGCGCGCCAA CTGGACTAAA
CTTGCCCATA TCGCCCAACC CGCCGCCTTG ATGAATTTAA TCAATCCCTT AGCCAATGCC
ATTATCATGG CGATGTTGGC GCATATCGAC CACAGCGCAG TGGCAGCCTT TGGTGCAGGT
ACTCGCTTAG AGTCAGTGCT ATTAATCGTG GTGATGGCGC TATCGTCGAG CTTAATGCCC
TTTATCGCGC AGAACTTAGG TGCAGGCCAG CCACAAAGGG CGAAAGAAGC CCTGCTGCTA
TCGATAAAAT TTATCTTTAT CTTCCAAACC ATACTTTATA TTCCACTGAT CTTTTTGGCT
GAACCTATCG CGCACTTATT CAGTACCGAT CCGCTGGTGA TCGAGTGGTT GAGTTTTTAC
ATCTTAGTGC TGCCCTGCGC CTACGGGCCT TTGGGCATAG TAATTATTGT GGCGACCTCG
CTCAATGCTT ACCACAGACC TATGAGTTCA TTAGTCATCA ATCTGTGCCG CTTAGTACTG
CTCATGCTGC CGCTAGCAGC CTTGGGATCG TATATAGGTG ACGTTAAAGG CCTGCTGCTC
GCGCTACCTG TGACCAATAT TTTGATGGGA ATTGCCTGTT ATTGGCTGGC GCAGCGGATC
TGTGAGCCCA CAAAGATCAC GACCGCAAAC GCCATTAGCG AGGGGTAA
|
|---|
| Protein sequence | MKDRHGLLTA PIGRVLLNMS LPNLIGIMTI LGFSLADTFF ISQLGTEALA AISFTFPVTL
VISSIAIGIG AGVSTNLGRL IGSGNAHKAK VFLHDALLLT FGLIASLAAL GSIFIEPLFR
LLGANDDSLP LIHDYMIYWY VGAPLLVLLM VGNQGLRSTG DTRSPAMIMA LAAIINLILD
PLLIFGIGPF PRLEIQGAAI ATLFAWLVAL SLSGYLLIVR RKMLEWTVFD IDRMRANWTK
LAHIAQPAAL MNLINPLANA IIMAMLAHID HSAVAAFGAG TRLESVLLIV VMALSSSLMP
FIAQNLGAGQ PQRAKEALLL SIKFIFIFQT ILYIPLIFLA EPIAHLFSTD PLVIEWLSFY
ILVLPCAYGP LGIVIIVATS LNAYHRPMSS LVINLCRLVL LMLPLAALGS YIGDVKGLLL
ALPVTNILMG IACYWLAQRI CEPTKITTAN AISEG
|
|---|
| |