Gene Sbal195_0409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal195_0409 
Symbol 
ID5752119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS195 
KingdomBacteria 
Replicon accessionNC_009997 
Strand
Start bp465578 
End bp466960 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content51% 
IMG OID641286667 
ProductUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 
Protein accessionYP_001552850 
Protein GI160873534 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0770] UDP-N-acetylmuramyl pentapeptide synthase 
TIGRFAM ID[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000667129 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATCCCTC TTTCTCTCGA AACCCTAAGT CAACACTTAG GTACGTTTCG AGTCGGTGAC 
GACGTCACCA TCGAAGATTT AAGCAGTGAT AGCCGCAAAA TCGGTGCTGC AACCCTGTTT
GTTGCCTTAA AGGGTGAGCG TTTTGATGGC CATGATTTTG CTGCAACAGC CATTGAGAAC
GGCGCCGCGG CGTTAATGGT CGAGCGCGAG TTAGCCTTTG ATATTCCGCA GCTGATTGTG
CCCGATTGCC AAAAAGCCAT GGGCGCGATA GGGGTTTATG TCCGTGACCA AATCAATCCC
ATTTGCGTGG CGTTAACTGG CTCAAACGGC AAGACCAGCG TGAAGGAAAT GATCGCGACC
ATTCTGTCGG CAAAGCATCA AATCCTCTAT ACCGCTGGTA ACTTCAACAA TGAAATCGGT
GTGCCGCTTA CCTTGCTGCG TTTAACGCCA GCGGATGAGT TTGGGATATT CGAACTCGGC
GCAAACCATA AAGGTGAAAT TGATTACACC TCGGGACTCG TGCGTCCGAA CGTGGCGCTG
GTGAATAACG TCGGCAGTGC CCACTTAGAA GGATTTGGAT CGCAAGCGGG TGTCGCGCAG
GCTAAGTCGG AAATTTTTAA TCATCTGCAG GCCGATGGCA CCGCCATCAT CAACGCCGAT
GATGCCTTCG CCGATTTTAT GAGCGTTAAG GCAAGACCTT ATAAGCAACT GAGCTTCTCC
CAGCAAGATG GCGCCGCTAA ACGTCATATC GACGTCATCG CTACAGGTCA TAAGACCAAT
GCCGATGGTT GCTATCGTTT TATGCTCAAT TACTCAGGTG AATCTTGCCA AGTGGTACTA
CCGCTGGCGG GTCGCCATCA GGTGAGTAAT GCACTAGCCG CTGCAAGTGT TTGTATTGCC
TTGGGATTAA GTTTGACAGA GATCGCCGAA GGCTTAAGCC AATTAACGCC AGTTAAAGGG
CGCATGCAGC CGAGTCAATT GGGACGCGTT CGTCTAATCG ACGATAGCTA TAACGCGAAT
CCTGTGTCCG TTGGGGCGGC AATCGCTTGG TTAAAGGAAA TTTCTGAAAA TCGCTGTCTG
GTACTGGGAG ATTTAGGAGA ATTAGGCGAC AATGCGCCCC TTTTACACGC TGAACTAGGG
CAACTGGCCA AGCAACAGGG GATAGATGCC TTGTTTTGCA CCGGAACGTT AAGTCAGCAC
ACGAGCCAAG CTTTCGGTGC GGAGCACTAT GACAGTGTGG CGACGTTAGT AGAAAAACTC
ATAAAGCATA TTAACCAGTT ACCGGGACAG GTAACGGTTC TCGTTAAAGG TTCACGTAGC
GCCGCCATGG AGCGGGTCGT GGATGGACTA ACAGTAGCCT TCGGGCGTGG GGAGTTAGTG
TAA
 
Protein sequence
MIPLSLETLS QHLGTFRVGD DVTIEDLSSD SRKIGAATLF VALKGERFDG HDFAATAIEN 
GAAALMVERE LAFDIPQLIV PDCQKAMGAI GVYVRDQINP ICVALTGSNG KTSVKEMIAT
ILSAKHQILY TAGNFNNEIG VPLTLLRLTP ADEFGIFELG ANHKGEIDYT SGLVRPNVAL
VNNVGSAHLE GFGSQAGVAQ AKSEIFNHLQ ADGTAIINAD DAFADFMSVK ARPYKQLSFS
QQDGAAKRHI DVIATGHKTN ADGCYRFMLN YSGESCQVVL PLAGRHQVSN ALAAASVCIA
LGLSLTEIAE GLSQLTPVKG RMQPSQLGRV RLIDDSYNAN PVSVGAAIAW LKEISENRCL
VLGDLGELGD NAPLLHAELG QLAKQQGIDA LFCTGTLSQH TSQAFGAEHY DSVATLVEKL
IKHINQLPGQ VTVLVKGSRS AAMERVVDGL TVAFGRGELV