Gene Sbal195_0223 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal195_0223 
SymbolrpsD 
ID5751929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS195 
KingdomBacteria 
Replicon accessionNC_009997 
Strand
Start bp260773 
End bp261393 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content45% 
IMG OID641286478 
Product30S ribosomal protein S4 
Protein accessionYP_001552665 
Protein GI160873349 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000278242 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0713336 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCC GAGAAGGTAC AGACCTTTTC 
TTAAAAAGCG GTGTGAGAGC AATCGATTCA AAGTGTAAAC TGGAAACTGC ACCTGGACAA
CATGGCGCTC GTAAGCCACG TTTGTCAGAG TATGGTACTC AGTTACGCGA AAAACAAAAA
GTTCGTCGTA TTTACGGTGT GTTAGAAAAA CAATTCCGTA ACTATTACAA AGATGCTGCA
CGTACTAAAG GCAACACAGG TGAAAACCTG CTTCAGCTTT TAGAAACCCG TCTTGATAAC
GTCGTTTATC GTATGGGCTT CGGTGCAACT CGTGCAGAAT CACGTCAGCT AGTAAGCCAT
AAATCAATTA TGGTTAACGG TCGTGTTGTT AACATTCCAT CATTCAAAGT GTCTGCGAAT
GATGTTGTGA GCATCCGCGA GAAGTCACGT ACTCAAGCTC GTATTAAAGC GGCTTTAGAA
GTGGCAGCTC AACGCGAGAA GCCTACATGG GTTGAAGTCG ACAATGCGAA AATGGAAGGT
GCTTTCAAGC GCGTTCCAGA ACGTAGCGAT TTGTCTGCGG AAATTAACGA ACAGCTGATC
GTCGAGCTTT ACTCTAAGTA A
 
Protein sequence
MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKPRLSE YGTQLREKQK 
VRRIYGVLEK QFRNYYKDAA RTKGNTGENL LQLLETRLDN VVYRMGFGAT RAESRQLVSH
KSIMVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKAALE VAAQREKPTW VEVDNAKMEG
AFKRVPERSD LSAEINEQLI VELYSK