Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_0193 |
Symbol | rpoB |
ID | 5751899 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | + |
Start bp | 236074 |
End bp | 240042 |
Gene Length | 3969 bp |
Protein Length | 1322 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641286448 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001552635 |
Protein GI | 160873319 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.146327 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0018171 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGGATATCC CTTATTTATT GTCTATCCAG CTAGACTCTT TTAAGAAGTT CACCGATCAA GATCCTACCG GTGAGCGCGG TTTAGAAGCC GCCTTCCGTA GCGTTTTTCC CATCAAGAGC TTTTCTGGTA ATTCAGAACT GCAATACGTC AGCTATAAGC TTGGCGAGCC TGTTTTTGAT GTGAAAGAGT GTCAGATCCG TGGTGTTACG TACTCAGCTC CACTACGCGT TAAATTACGC ATGGTGTTGT ATGACCGTGA AGCAGCGGCG GGCACAGTAA AAGATATTAA AGAACAAGAA GTCTACATGG GTGATATCCC ATTGATGACG GATAACGGTA CTTTTGTTAT CAATGGTACT GAGCGTGTAA TCGTCTCTCA ATTACATCGT TCTCCAGGCG TGTTCTTTGA TCATGACCGT GGTAAAACCC ACTCATCAGG TAAGGTGCTG TATAACGCAC GTATTATTCC TTACCGTGGT TCATGGCTTG ACTTTGAATT CGATCCTAAA GATGCACTAT TTGTGCGTAT TGACCGTCGC CGCAAATTGC CTGCGACCAT CATGTTACGT GCATTAGAAT ATTCTACTCA AGAGATCCTC GATCTGTTCT TTGAACGCGT TGAGTTCAAG ATCAAGAAAG ATACTCTGGT TATGGCTTTG GTTCCTGAGC GTCTACGTGG CGAAACAGCC AGCTATGACA TCAAGGATGC TGAAGGTTCT GTATTGGTTG AAGCCGGTCG TCGTATCACT GCGCGCCACA TTCGCCAATT AGAAAAAACC AATACCACCG AGCTCGAAGT GCCAGTTGAA TATATCGTGG GCAAATATGC TGCTCAAGAT TATATCGATC CGGACACGGG TGAAGTTTTA GTCTCTGCCA ACAGCGAAAT TAGCCTAGAA GATCTGGCTA AATTATCATT GGCCGGTATT AAAGAACTCA GCACGTTGTA TATCAACGAG CTAGATCATG GTGCTTATAT TTCAGATACG CTGCGTATCG ATTCAACCAC TAACCGCTTA GAAGCGCTGG TTGAGATCTA TCGTATGATG CGTCCTGGCG AGCCACCAAC CAAAGATGCT GCCGAAGCAC TATTCCAGAA CTTGTTCTTC AGTGAAGAGC GTTATGACCT GTCTAAAGTA GGTCGTATGA AGTTCAACCG TCGTCTCAGC ATTCCTGATG ACGAAGGTAG CGGTGTATTG TCTAAAGAAG ACATCGTCGC GGTAATGAAA AATATCATTC ATATCCGTAA CGGTTTCGAC GAAGTCGATG ATATCGATCA CTTAGGTAAC CGTCGTATTC GTAGCGTCGG TGAAATGGCT GAAAACCAAT TCCGCGTAGG TTTAGTCCGT GTTGAGCGCG CCGTGCGTGA ACGTCTATCT TTAGGCGATC TGAACGAGCT GATGCCACAA GACTTGATCA ACGCTAAGCC AATTTCTGCT GCAGTGAAAG AGTTCTTCGG TTCTTCTCAG CTGTCACAAT TCATGGACCA AAACAACCCG CTATCAGAAG TAACGCATAA GCGTCGTATT TCTGCTCTTG GCCCCGGTGG TTTGACTCGT GAACGTGCAG GCTTCGAAGT CCGCGACGTA CATCCAACGC ATTATGGTCG TTTATGTCCA ATTGAGACCC CTGAAGGTCC AAACATTGGT CTAATCAACT CATTAGCAAG TTTTGCCCGT ACTAACTCAT ACGGCTTCCT AGAAACGCCA TACCGCAAGG TTATCGACGG CGTGATTACT GACGAAGTGG AATACTTGTC AGCAATCGAA GAAGGTCGTT ATGTGATTGC ACAGGCGAAC ATTGAAATTG ATGCGAACGG TCGTATGGCA GAAGAGCAAA TTGCTTGTCG TCATAAAGGT GAATCTACCT TTATGCGCGC TGCTGACATC CAGTATATGG ACGTTTCGCC ACAACAGATT ATTTCAGTTG CTGCGTCGCT CATCCCGTTC TTAGAACACG ATGATGCTAA CCGTGCATTG ATGGGTGCGA ACATGCAACG TCAAGCCGTA CCAACACTGC GCTCTGAAAA GCCGCTAGTA GGTACTGGCA TTGAACGTAC TCTTGCTGTT GACTCAGGTG TTGTGGTTGT TGCTAAGCGT GGTGGTTTTG TAGACTACGT TGATGCGAGC CGTATCGTTG TTAAGGTAAA TGAAGATGAG CTACGCCCAG GCGAAGCCGG TATCGACATT TATAACCTGA CTAAGTACAC GCGTTCTAAC CAAAACACTT GTATCAACCA ACGTCCTTGT TGTTCAGTTG GTGAGCCAGT GGTTCGCGGT GACGTGTTAG CAGACGGTCC GTCTACTGAC TTAGGTGACT TAGCCCTTGG CCAGAACATG CGTATCGCGT TCATGCCTTG GAACGGTTAC AACTTCGAAG ATTCGATCTT AATTTCTGAG CGCGTAGCGC AAGAAGACCG TTTCACCACT ATCCATATTC AGGAGCTGTC TTGTATTGCT CGTGATACTA AGTTGGGTAG CGAAGAAATC ACGGCTGATA TTCCAAACGT AGGTGAGTCT GCTCTGTCGA AACTCGACGA GTCAGGTATC GTTTACATTG GTGCAGAAGT GAAGGGCGGC GATATTCTGG TTGGTAAAGT GACGCCAAAA GGCGAAACAC AGCTAACGCC AGAAGAGAAG TTATTGCGAG CTATCTTCGG TGAGAAAGCG TCTGACGTTA AAGACAGTTC ACTGCGTGTA CCTAACTCTG TTAAGGGTAC TATCATCGAC GTTCAGGTAT TTATCCGTGA CGGCGTTGAG AAAGACAAGC GTGCAGTTGA AATCGAAGAG ATGCACATTG CCCAAGCTCG TAAAGACTTA GGTGAAGAGT TCAAGATCCT TGAAGAAGGT GTATTGAGCC GTGCGCGTAA CTTGTTAATC GGTGCTGGTT TCACTGACGC GCAAATTGCT GCCTTGCCAC GTAAAGATGT TTTGATTCAA GTCATTGACG ATGAAACTAA ACAAACTGAA CTTGAGCAAT TGGCTGAACA GCATGAAGAG CTGAAAGCTG ACTTCGATAA GAAGTTTGAA ATCAAACGTC GCAAGATCAC CCAAGGTGAT GACTTGGCTC CAGGCGTACT CAAGATTGTT AAGGTTTACT TAGCGGTTAA GCGTACTATC CAACCTGGTG ACAAGATGGC GGGTCGTCAC GGTAACAAGG GTGTTATCTC TAAGATTTGC CCAATCGAAG ACATGCCGTA TGACGAACAA GGTAACCCAG TAGACATCGT ATTGAACCCA CTAGGTGTTC CATCACGTAT GAACATTGGT CAGGTACTTG AAGTCCATAT GGGCGCCGCT GCCAAAGGCA TTGGTAACAA GATCACTGCG ATGCTTGAAG AACAGCGTGA GCTGGCTGAA GTTCGTGGCT ACATCAAACA AGTTTATGAA TTAGGTGACG AAGTGCAACA GCGCGTCGAT ATCGATTCAT TCACTGATGA TGAAGTATTA CGTCTTGCGA CTAACCTGAA AGGCGGTATC CCGATTGCAA CTCCTGCATT CGATGGTGCT AAAGAGAAAG AGATCAAGCA GATGCTTGAA CTTGCAGGTT TGCCAACTTC TGGTCAGTTG AAGTTGTTTG ATGGTCGTAC CGGTAACGAA TTTGAGCGTC AAGTAACAGT TGGTTACATG TACATGCTCA AACTGAACCA CTTAGTTGAT GACAAGATGC ACGCCCGTTC TACAGGTTCG TACAGCTTAG TGACTCAACA ACCACTGGGC GGTAAAGCTC AGTTCGGTGG TCAGCGTTTC GGTGAGATGG AAGTGTGGGC ACTAGAAGCA TACGGTGCCG CTTATACGCT TCAAGAAATG CTCACTGTTA AATCGGATGA CGTTAACGGT CGTACTCAGA TGTATAAGAA CATCGTCGAC GGTAACCATC AGATGCAACC TGGCATGCCA GAGTCCTTCA ACGTGTTACT GAAGGAGATC CGTTCACTCG GTATTAATAT CGAGTTGGAT CAGGCATAA
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Protein sequence | MDIPYLLSIQ LDSFKKFTDQ DPTGERGLEA AFRSVFPIKS FSGNSELQYV SYKLGEPVFD VKECQIRGVT YSAPLRVKLR MVLYDREAAA GTVKDIKEQE VYMGDIPLMT DNGTFVINGT ERVIVSQLHR SPGVFFDHDR GKTHSSGKVL YNARIIPYRG SWLDFEFDPK DALFVRIDRR RKLPATIMLR ALEYSTQEIL DLFFERVEFK IKKDTLVMAL VPERLRGETA SYDIKDAEGS VLVEAGRRIT ARHIRQLEKT NTTELEVPVE YIVGKYAAQD YIDPDTGEVL VSANSEISLE DLAKLSLAGI KELSTLYINE LDHGAYISDT LRIDSTTNRL EALVEIYRMM RPGEPPTKDA AEALFQNLFF SEERYDLSKV GRMKFNRRLS IPDDEGSGVL SKEDIVAVMK NIIHIRNGFD EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVRERLS LGDLNELMPQ DLINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEVTHKRRI SALGPGGLTR ERAGFEVRDV HPTHYGRLCP IETPEGPNIG LINSLASFAR TNSYGFLETP YRKVIDGVIT DEVEYLSAIE EGRYVIAQAN IEIDANGRMA EEQIACRHKG ESTFMRAADI QYMDVSPQQI ISVAASLIPF LEHDDANRAL MGANMQRQAV PTLRSEKPLV GTGIERTLAV DSGVVVVAKR GGFVDYVDAS RIVVKVNEDE LRPGEAGIDI YNLTKYTRSN QNTCINQRPC CSVGEPVVRG DVLADGPSTD LGDLALGQNM RIAFMPWNGY NFEDSILISE RVAQEDRFTT IHIQELSCIA RDTKLGSEEI TADIPNVGES ALSKLDESGI VYIGAEVKGG DILVGKVTPK GETQLTPEEK LLRAIFGEKA SDVKDSSLRV PNSVKGTIID VQVFIRDGVE KDKRAVEIEE MHIAQARKDL GEEFKILEEG VLSRARNLLI GAGFTDAQIA ALPRKDVLIQ VIDDETKQTE LEQLAEQHEE LKADFDKKFE IKRRKITQGD DLAPGVLKIV KVYLAVKRTI QPGDKMAGRH GNKGVISKIC PIEDMPYDEQ GNPVDIVLNP LGVPSRMNIG QVLEVHMGAA AKGIGNKITA MLEEQRELAE VRGYIKQVYE LGDEVQQRVD IDSFTDDEVL RLATNLKGGI PIATPAFDGA KEKEIKQMLE LAGLPTSGQL KLFDGRTGNE FERQVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTQMYKNIVD GNHQMQPGMP ESFNVLLKEI RSLGINIELD QA
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