| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_0153 |
|---|
| Symbol | |
|---|
| ID | 5751850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 181183 |
|---|
| End bp | 183300 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641286399 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_001552595 |
|---|
| Protein GI | 160873279 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0109917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0543101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACA AAAGGATTCG ACGCAAGCTG ATTGCAGGGA TTGTTGCGGG TGCAGCCATG
TTCTCCTCCC AATTCGCTTG GTCTGAACAG TATGCGGCCA ACTTTAAGGG CACGGATATT
CAAGAGTTTA TCAACATAGT TGGTAAAAAC TTGAACAAGA CCATCATAGT CGACCCGACG
ATCCGCGGCA AAATCAACGT TCGCAGTTAT GATCTGCTGA ACGATGAACA GTATTACCAG
TTTTTCCTCA ACGTCTTACA AGTCTACGGT TATGCCATCG TCGAGATGGA AAATAACGTC
ATCAAAGTCA TTAAAGACAA AGACGCTAAA ACTGCAGCAA TCCGAGTGGC TAACGATGCC
GAACCTGGAA TAGGCGATGA GATGGTCACG CGTATAGTGG CGCTGTATAA CACTGAGGCC
AAACAATTAG CTCCGCTGTT ACGCCAATTA AATGATAACG CGGGTGGCGG TAACGTAGTG
AACTACGATC CCTCCAACGT CTTGATGTTG TCTGGTCGTG CTGCTGTGGT GAACAAGTTA
GTGGAAATTG TCCGCCGCGT AGATAAACAG GGCGACACCT CAGTACAAGT GGTGCCGTTA
GAGTTCGCCT CCGCCGGTGA AATGGTACGA ATTATTGATA CCCTTTATCG CGCCACGGCT
AACCAATCTC AAATGCCAGG CCAAGCGCCG AAAGTGGTCG CCGACGAACG TATCAACGCT
GTGGTTGTTA GCGGCGACGA AAAGAGCCGC CAACGTGTGG TTGAGCTCAT TCATCGTCTC
GATGCCGAGC AAGCCAGTAC AGGCAACACT AAGGTGCGTT ACTTACGTTA TGCCAAGGCC
GAAGATTTAG TTGAAGTGCT GACAGGTTTT GCCCAGAAAT TAGAGGGCGA AAAAGATCCA
AACGCTCAAG CTGCAGGTGG TAAACGCCGC AATGAAATCA ATATTATGGC CCATGCTGAG
ACCAATGCCT TAGTGATCAG TGCCGAACCC GATCAAATGC GTACTATCGA GAGCGTGATT
AATCAGCTCG ATATTCGTCG TGCTCAAGTG TTAGTCGAAG CGATTATCGT GGAAGTGGCT
GAAGGCGATA ACGTTGGTTT TGGGGTCCAA TGGGCGTCTA AATCAGGGCT CGGCACTCAG
TTTAATAACT TAGGCCCAAC CATAGGTGAG ATTGGCGCAG GGATTTGGCA GGCGCAGGAT
GTGAAAGCTT CCCAAACTTG TACTGGTTCG GGTGATAATC AGACCTGTAC AGATAACCCT
GACACTAAAG GCGATGTGAC ACTACTTGCC CAAGCTTTAG GCAAAGTGAA CGGTATGGCT
TGGGGTGTGG CCATGGGCGA CTTTGGTGCC TTAATTCAAG CCGTGTCGAG TGACACTAAC
TCAAACGTAC TGGCGACACC GTCGATTACC ACTTTAGATA ACCAAGAAGC GTCTTTCATC
GTCGGTGATG AAGTGCCTAT TCTGACGGGC TCTACCGCCA GTTCGAGCAA CAGTAACCCA
TTCCAAACCG TTGAACGTAA AGAGGTTGGG GTTAAGCTGA AAGTGGTGCC GCAGATCAAC
GAAGGTAATG CGGTTAAGCT GACGATTGAA CAGGAAGTGT CAGGGGTTAA CGGTAACACA
GGTGTGGATA TTTCCTTTGC GACTCGCCGT TTAACCACCA CTGTTATGGC TGACTCAGGG
CAAATCGTGG TTCTGGGTGG TTTGATCAAC GAAGAAGTAC AAGAAAGCAT ACAAAAAGTA
CCATTCTTGG GTGATATCCC TATCATTGGC CACTTATTTA AATCTTCTTC GAGCAAAAAG
ACCAAGAAAA ACCTGATGAT CTTCATCAAG CCAACCATTA TCCGTGATGG CATCACAATG
GAAGGGATTG CTGGGCGCAA ATATAACTAT TTCAGAGCAT TACAACTTGA GCAGCAAGAA
CGTGGCGTCA ACTTAATGCC AAATACTAAA GTGCCTGTGT TGGAAGAATG GAATCAATCA
GAGTATTTAC CGCCAGAAGT TAACGCGATT TTAGAGCGTT ATAAAGAAGG CAAAGGTTTA
GATGCCCAGA TGCGCCAAAC GGATCCGACC TTAAAGTCAC TGGAAGAAAA CAAGAATAAA
GATAAAACCA ATGAGTGA
|
|---|
| Protein sequence | MNNKRIRRKL IAGIVAGAAM FSSQFAWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT
IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENNV IKVIKDKDAK TAAIRVANDA
EPGIGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML SGRAAVVNKL
VEIVRRVDKQ GDTSVQVVPL EFASAGEMVR IIDTLYRATA NQSQMPGQAP KVVADERINA
VVVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLEGEKDP
NAQAAGGKRR NEINIMAHAE TNALVISAEP DQMRTIESVI NQLDIRRAQV LVEAIIVEVA
EGDNVGFGVQ WASKSGLGTQ FNNLGPTIGE IGAGIWQAQD VKASQTCTGS GDNQTCTDNP
DTKGDVTLLA QALGKVNGMA WGVAMGDFGA LIQAVSSDTN SNVLATPSIT TLDNQEASFI
VGDEVPILTG STASSSNSNP FQTVERKEVG VKLKVVPQIN EGNAVKLTIE QEVSGVNGNT
GVDISFATRR LTTTVMADSG QIVVLGGLIN EEVQESIQKV PFLGDIPIIG HLFKSSSSKK
TKKNLMIFIK PTIIRDGITM EGIAGRKYNY FRALQLEQQE RGVNLMPNTK VPVLEEWNQS
EYLPPEVNAI LERYKEGKGL DAQMRQTDPT LKSLEENKNK DKTNE
|
|---|
| |