Gene P9211_16071 details

Gene Information

• Locus tag: P9211_16071
• Symbol: rpoB
• ID: 5730824
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9211
• Kingdom: Bacteria
• Replicon accession: NC_009976
• Strand: -
• Start bp: 1436468
• End bp: 1439758
• Gene Length: 3291 bp
• Protein Length: 1096 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 641285985
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_001551492
• Protein GI: 159904148
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.614693
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTAGAA GCGCGATTCA GGTCGCTAAG ACCGCTACAC ACCTGCCTGA CTTGGTTGAG 
GTGCAGCGTG CAAGCTTTAA GTGGTTTTTG GAAAAAGGTT TAATTGAGGA GCTTGAGAAC 
TTCTCACCAA TTACTGATTA CACGGGCAAG CTAGAGCTAC ATTTTATTGG CAGTGAATAT 
CGGCTTAAGC GGCCTCGCCA TGATGTGGAA GAAGCTAAAA AGCGCGATGC AACTTTTGCT 
TCCCAAATGT ATGTAACTTG CCGTCTTATT AATAAAGAAA CTGGAGAAAT AAAAGAACAA 
GAAGTTTTTA TTGGTGAATT GCCATTAATG ACTGAAAGAG GAACATTTAT CATTAATGGA 
GCAGAAAGAG TAATTGTTAA TCAGATAGTA AGAAGCCCTG GCGTATATTT TAAAGATGAG 
CAAGATAAAA ATGGCCGAAG AACTTACAAT GCAAGTGTTA TTCCTAATCG CGGGGCATGG 
TTAAAGTTTG AAACAGATAA GAATGATTTA CTTCATGTTC GTGTAGATAA AACTAGAAAA 
ATTAATGCTC ATGTTCTAAT GAGAGCAATG GGTCTATCAG ATAATGATGT AATAGATAAA 
TTAAGACATC CTGAATACTA TAAGAAATCT ATTGAAGCCG CTGATGAAGA AGGTATTAGC 
TCCGAGGATC AGGCTTTGCT TGAGCTATAT AAAAAGTTGC GACCTGGCGA ACCACCCTCA 
GTCAGTGGTG GTCAGCAATT GCTTCAGAGC AGGTTCTTTG ACCCAAAACG TTATGATTTA 
GGACGTGTCG GTAGATATAA AATAAACAAG AAATTACGTT TAACTATACC TGACTCTGTA 
AGAACTCTGA CTCATGAGGA TGTTCTTTCT ACTATTGATT ATTTAATTAA TCTTGAGCTA 
GATGTTGGTG GGGCGACTTT AGATGATATT GACCATCTTG GTAATAGAAG AGTTAGATCT 
GTTGGAGAGT TATTGCAAAA TCAAGTTCGT GTTGGTTTAA ATCGTCTTGA AAGAATAATC 
AAGGAAAGAA TGACAGTAGG TGAAACAGAT TCATTGACTC CAGCACAACT AGTAAACCCC 
AAGCCTCTAG TGGCTGCTGT TAAAGAGTTC TTTGGATCAA GTCAACTTAG TCAGTTTATG 
GATCAGACCA ATCCTTTGGC TGAATTAACT CATAAAAGGC GGATTTCGGC ATTAGGACCA 
GGTGGTTTAA CTAGAGAAAG AGCAGGTTTT GCGGTAAGAG ATATTCATCC TTCTCATTAT 
GGACGCTTGT GTCCTATTGA AACTCCAGAG GGGCCAAATG CTGGTCTAAT TAATTCCTTA 
GCTACTCATG CCAGGGTTAA TGATTATGGA TTCATTGAAA CGCCTTTCTG GAAAGTAGAT 
AAAGGAAGAG TTATTAAGGA GGGAAAGCCA ATTTATCTAT CTGCTGATCT AGAAGATGAA 
TGCAGAGTTG CGCCTGGTGA TGTTGCTACG GATAAAGAAG GCATGATTGT TGCTGATTTG 
ATTCCAGTTA GATATAGGCA GGATTTTGAG AAGGTTCCTC CTGAGCAAGT GGATTATGTG 
CAACTTTCAC CAGTGCAAGT GATTTCTGTA GCGACATCTT TAATTCCATT TTTAGAACAT 
GACGATGCAA ACAGGGCTTT AATGGGTTCT AATATGCAGC GTCAAGCTGT CCCTCTTCTG 
CGTCCAGAAC GACCTTTAGT TGGGACAGGT TTGGAAACAC AGGTTGCTAG AGACTCCGGG 
ATGGTCCCTA TCTCTCAAGT CAATGGAACA GTAACTTATG TAGACGCTAA TATCATTGTT 
GTTACTGATG AAGAAGGTTC CGAGCATCAT CATTCTTTGC AGAAATATCA ACGTTCTAAT 
CAGGACACAT GCTTGAATCA AAGACCCATT GTTCATAATG GCGATCCGGT AATTATTGGT 
CAGGTTCTTG CAGACGGATC TGCATGTGAA GGAGGAGAAA TAGCCTTAGG TCAAAATGTC 
TTAATCGCTT ATATGCCTTG GGAGGGTTAT AACTATGAGG ATGCAATTTT AGTCAGTGAG 
AGATTAGTAA AAGATGATCT ATATACTTCA GTGCATATTG AAAAATATGA GATTGAAGCT 
CGACAAACAA AACTAGGCCC AGAGGAAATA ACGAGGGAAA TTCCCAACAT AGCCGAAGAA 
AGTTTGGGTA ATCTTGATGA AATGGGCATT ATTAGGATTG GTGCTTTTGT TGAGAGCGGA 
GATATTCTTG TAGGAAAAGT TACCCCTAAG GGGGAGTCTG ATCAACCTCC TGAAGAGAAG 
CTTTTAAGGG CTATATTTGG TGAAAAAGCA AGAGATGTAA GAGATAATTC ATTGAGAGTT 
CCTAGTACTG AAAGAGGTCG AGTCGTTGAT GTGCGTATTT ATACGAGAGA ACAGGGTGAT 
GAACTTCCGC CTGGAGCAAA TATGGTAGTT CGAGTTTATG TGGCACAAAG AAGAAAAATA 
CAAGTAGGGG ATAAGATGGC AGGACGCCAT GGGAATAAGG GAATTATTAG TCGGATACTT 
CCTAGAGAAG ACATGCCTTA TTTGCCTGAT GGAACCCCAG TAGATATTGT CCTTAACCCT 
CTTGGTGTGC CAAGTAGAAT GAATGTTGGA CAAGTTTTTG AGTTGTTGAT GGGTTGGGCA 
GCCTCGAATT TGGATTGCAG GGTTAAAGTT GTTCCATTCG ACGAAATGTA TGGTGCTGAA 
AAGTCCTATC AGACAGTAAC TGCTTACCTT AAAGAGGCCG CTAGTTTGCC AGGCAAAGAA 
TGGGTCTACA ACCCAGAAGA CCCAGGAAAG CTACTTCTAA GAGATGGAAG GACTGGAGAA 
CCTTTTGATC AGCCTGTTGC AGTTGGCTAC TCACATTTCC TTAAATTAGT TCACTTAGTA 
GACGATAAAA TTCACGCTCG CTCTACTGGT CCGTACTCTC TAGTTACTCA GCAACCTTTA 
GGAGGTAAAG CTCAACAAGG AGGACAACGT TTAGGAGAAA TGGAGGTTTG GGCTTTAGAG 
GCTTATGGAG CAGCATATAC TTTGCAAGAA TTGTTGACTG TCAAGTCTGA TGATATGCAA 
GGTCGAAATG AGGCGCTTAA TGCAATTGTC AAAGGCAAGC CAATTCCAAG GCCAGGAACC 
CCAGAATCGT TCAAAGTTTT AATGCGAGAA CTTCAGTCTC TTGGACTAGA CATTGGAGTG 
TATACAGATG AAGGGAAAGA AGTTGATTTG ATGCAGGATG TTAATCCACG TCGAAGTACT 
CCTAGTAGAC CAACTTATGA ATCATTGGGA TCAGATTATC AAGAGGATTA A 

 

Protein sequence

MSRSAIQVAK TATHLPDLVE VQRASFKWFL EKGLIEELEN FSPITDYTGK LELHFIGSEY 
RLKRPRHDVE EAKKRDATFA SQMYVTCRLI NKETGEIKEQ EVFIGELPLM TERGTFIING 
AERVIVNQIV RSPGVYFKDE QDKNGRRTYN ASVIPNRGAW LKFETDKNDL LHVRVDKTRK 
INAHVLMRAM GLSDNDVIDK LRHPEYYKKS IEAADEEGIS SEDQALLELY KKLRPGEPPS 
VSGGQQLLQS RFFDPKRYDL GRVGRYKINK KLRLTIPDSV RTLTHEDVLS TIDYLINLEL 
DVGGATLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP 
KPLVAAVKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY 
GRLCPIETPE GPNAGLINSL ATHARVNDYG FIETPFWKVD KGRVIKEGKP IYLSADLEDE 
CRVAPGDVAT DKEGMIVADL IPVRYRQDFE KVPPEQVDYV QLSPVQVISV ATSLIPFLEH 
DDANRALMGS NMQRQAVPLL RPERPLVGTG LETQVARDSG MVPISQVNGT VTYVDANIIV 
VTDEEGSEHH HSLQKYQRSN QDTCLNQRPI VHNGDPVIIG QVLADGSACE GGEIALGQNV 
LIAYMPWEGY NYEDAILVSE RLVKDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNIAEE 
SLGNLDEMGI IRIGAFVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV 
PSTERGRVVD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL 
PREDMPYLPD GTPVDIVLNP LGVPSRMNVG QVFELLMGWA ASNLDCRVKV VPFDEMYGAE 
KSYQTVTAYL KEAASLPGKE WVYNPEDPGK LLLRDGRTGE PFDQPVAVGY SHFLKLVHLV 
DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ 
GRNEALNAIV KGKPIPRPGT PESFKVLMRE LQSLGLDIGV YTDEGKEVDL MQDVNPRRST 
PSRPTYESLG SDYQED