| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_10851 |
|---|
| Symbol | srmB |
|---|
| ID | 5730678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9211 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009976 |
|---|
| Strand | + |
|---|
| Start bp | 986500 |
|---|
| End bp | 988314 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641285452 |
|---|
| Product | putative ATP-dependent RNA helicase |
|---|
| Protein accession | YP_001550970 |
|---|
| Protein GI | 159903626 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.638116 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.290308 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACGA AAAAAACTCA GGCTGGTTCT TCATGTTTAA AAAAGACAGG AAGTTCTAAA
GAATTAAGCT TAGAAAGTGA AAGCGTTTCA GAGGTAGCTT CTAAAGACCA ATCAAAACTT
TCCATTAATG AAAATCCTGA AGTTCATAAA TCTCTAGGTT TTGAAGGTTT TGGATTTAGT
GATGATCTGA TAAACACACT GGAAAGTAAG GGTTACAAAG ACCCTACCCC AATTCAAAAA
GCAGCCTTCC CAGAATTGAT GCTCGGCCGA GATCTCCTAG GTCAAGCTCA AACAGGGACA
GGAAAAACGG CTGCCTTTGC TCTACCAATA CTTGAAAGGA TAAAACAAGA CACGCGTGCG
CCTCAAGTTC TCGTCCTAGC ACCTACGCGC GAACTTGCCA TGCAAGTAGC AGATTCATTT
CGTGCTTATG CCCAGGGAAG GCCCGAGGTT CAAGTTCTAG CAGTATATGG AGGCTCAGAC
TTCAGAGCGC AGATCAATGC ACTCAGGAGA GGTGTACAAA TTGTTGTGGG GACGCCTGGA
AGAGTCATGG ATCATATTAG ACAAGGGACT TTTATAAAGA CTGATTTGGA AACACTTGTT
CTAGATGAAG CGGACGAAAT GCTAAGGATG GGCTTTATTG ATGATATTGA GTGGATACTC
GAACAGTTGC CTGCAAAGCG TCAGATGATA TTCTTTTCAG CAACAATGCC TAGTGAGATA
AGACGTTTAT CAAAACAGTA TCTACATGAA CCAGCTGAAA TTACGATTAA AGCCCAAAAG
AAAGAAGCTC AATTGATTCG ACAAAGGTAT ATTGTAATTC AAAATAGTTT CAAGCTTGAA
GCATTAAAAA GGGTACTTGA AACAACTGCA GATGAAGGAG TTATTATCTT TGCTAGGACA
AAGGCCATTA CCCTTAGACT TTCCGAAAGT CTAGAAGCCT TAAATCATAA TGTCGCCGTT
CTAAATGGAG ATGTACCACA AACCTTAAGA GAAAGAACAA TTGAACGCCT ACGCCAGGGA
GGTATAGATA TACTTGTTGC AACAGATGTT GCAGCAAGGG GACTTGACGT AGAACGAATT
GGACTTGTAA TTAATTACGA TATGCCTTTT GATTCAGAGG CTTATGTGCA TCGCATTGGA
AGAACTGGTA GGGCGGGGAG AACTGGGGAA GCAATCCTTT TCGTAAGCCC AAGAGAAAGA
TCTTTTATAA ACAATCTAGA ACGAGCGGTT GGTCAAAGTA TAGAAAAGAT GGAAATTCCA
AATAATGAAA TCATTAATCA ACACCGAATT AACAAGCTCA AAAACAATTT GAGCCAAGCA
GTTGAGACAC CTAGACAACA TGAAGAGGAA ACAGAAATTC TGAAATGCCT GATTAAAGAA
GTAGGTGAAG AATTAGAGAT AGAGACTAAA GACATTGCAG TAGCCGCATT AAATCTTGCA
ATAGGTAGTC TCCCACTGAA AATTCAAGAG GACGAGAGTT GGTTAAGTCA ACAAAACATC
TCACGTAAAA ACTATGACCG TCGAGACGAT AGAGGCAGAT CACGTCGAAA AAATAGCTTT
AACTCCTCGC ATCCTGATAA AGATAAAGAG CGTTATAAAT TAGATGTAGG CCATAGAGAT
AGAGTAAAGC CAGGAAATAT TGTAGGTGCT ATAGCCAATG AGAGTGGTCT AAAAGGAAAC
ATGATAGGCC GCATACAAAT TTTTGATAAT TACAGTTTAG TAGACCTACC TAAAGGTATG
CCCACAAATA TTTATAAAAG CTTGAAGACA GTTAAAGTAA TGAATAAAGA GCTAAATATT
AATCTTTATA AATAA
|
|---|
| Protein sequence | MATKKTQAGS SCLKKTGSSK ELSLESESVS EVASKDQSKL SINENPEVHK SLGFEGFGFS
DDLINTLESK GYKDPTPIQK AAFPELMLGR DLLGQAQTGT GKTAAFALPI LERIKQDTRA
PQVLVLAPTR ELAMQVADSF RAYAQGRPEV QVLAVYGGSD FRAQINALRR GVQIVVGTPG
RVMDHIRQGT FIKTDLETLV LDEADEMLRM GFIDDIEWIL EQLPAKRQMI FFSATMPSEI
RRLSKQYLHE PAEITIKAQK KEAQLIRQRY IVIQNSFKLE ALKRVLETTA DEGVIIFART
KAITLRLSES LEALNHNVAV LNGDVPQTLR ERTIERLRQG GIDILVATDV AARGLDVERI
GLVINYDMPF DSEAYVHRIG RTGRAGRTGE AILFVSPRER SFINNLERAV GQSIEKMEIP
NNEIINQHRI NKLKNNLSQA VETPRQHEEE TEILKCLIKE VGEELEIETK DIAVAALNLA
IGSLPLKIQE DESWLSQQNI SRKNYDRRDD RGRSRRKNSF NSSHPDKDKE RYKLDVGHRD
RVKPGNIVGA IANESGLKGN MIGRIQIFDN YSLVDLPKGM PTNIYKSLKT VKVMNKELNI
NLYK
|
|---|
| |