| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_08761 |
|---|
| Symbol | dapF |
|---|
| ID | 5730572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9211 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009976 |
|---|
| Strand | + |
|---|
| Start bp | 771557 |
|---|
| End bp | 772411 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641285241 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001550761 |
|---|
| Protein GI | 159903417 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0472927 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000801401 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTAA TTGGCTTTAA GAAATACCAT GGACTTGGTA ATGACTTCAT AATAATAGAT
GGCAGGTTTA GCTTACTGCC AAGCTCTATA GTTTCTGCAG AAAAACATCT AGTAATATCA
TTATGTAAGA GACATTATGG AATTGGATGT GATGGAATCA TTCTTATTTT ACCTCCAGTT
GCTGGAGGAG ACTTTAGAAT GAAAATATTT AATTCTGATG GAAGTGAACC CGAAATGTGT
GGCAATGGTA TTAGGTGCTT AATACGTTAT ATTTTAGATG ATTCAGAGGA TGATTTTGTT
GATAGCTTTA TAGTTGAGAC ACTAGCAGGC AAGATTCAAA TTAATATTGA AGAAGGTAAT
ATTAAAGTTG ATATGGGATC GCCCATATTT GCTCCAGAAA AGATACCTAC TACTTTGCCA
ATTAACGAGA GGGGCATTCC TCAAGGCCGA ATCACTATTT TAGATCAAGA TTTTTTAGTA
TCAGCTTGTA GTATGGGAAA TCCACACGCA ATTATAGAAG TTCCAACTAT TAAAAATATA
CCCTTATATG AATGGGGGCA AAAGTTAGAA ACTCATCCGG TTTTTCCAAA GTATACTAAT
GTTCACTTTG TACAGGTTAA ATCTCGATCA GAAATCGAAA TTTTAATATG GGAAAGGGGT
TGTGGCCCTA CCCTTGCTTG CGGAACGGGA GCTTGCGCTT GCTTGGCAGT TTTAGCTAAA
TTAGGTAAGT GCAATGATCT AATCCTTGTT AAGCTACCAG GCGGGGAATT AGAGATTAAT
TGGCCAAAAA TGAAAGGTTC TATCTTTATG ATAGGCGATG CTAAATACGT ATATTCAGGT
TCATTTAATA TCTAA
|
|---|
| Protein sequence | MTLIGFKKYH GLGNDFIIID GRFSLLPSSI VSAEKHLVIS LCKRHYGIGC DGIILILPPV
AGGDFRMKIF NSDGSEPEMC GNGIRCLIRY ILDDSEDDFV DSFIVETLAG KIQINIEEGN
IKVDMGSPIF APEKIPTTLP INERGIPQGR ITILDQDFLV SACSMGNPHA IIEVPTIKNI
PLYEWGQKLE THPVFPKYTN VHFVQVKSRS EIEILIWERG CGPTLACGTG ACACLAVLAK
LGKCNDLILV KLPGGELEIN WPKMKGSIFM IGDAKYVYSG SFNI
|
|---|
| |