| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_08271 |
|---|
| Symbol | |
|---|
| ID | 5731323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9211 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009976 |
|---|
| Strand | - |
|---|
| Start bp | 728489 |
|---|
| End bp | 728995 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641285191 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001550712 |
|---|
| Protein GI | 159903368 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.125475 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000413407 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTAT TACATGAATA TCTAAAAAAC CCAAGAGTAA GGAAGGTTTT AAGTTCTAAG
CCTGGTAACA AAGGCTTTTC ATTAGTTGAG CTTGTTGTTG TAATTGCAGT TCTGGCGATT
TTGTCAGCAG TAGCAATCCC AAACTTTATA TCAGTCCAAT CAAAGGCTCA AATTTCCGCT
GTTAAGAATG GCTTGGTTAA CGGTATTAAA GAATGTGTAG TAGCTTATCT AGATGATCCT
GAAAATATAC CGGAATTTGC TGAGATAAAT GCCTTTAATG GTGATTACAC AGGATACGCA
ATAGAACCTT TAGCGGAAGA TCAAGAGGGA TGTTTTGAAG CTGAAGGTAT ACACGCCGCC
GGAGTTCTTC CAACTTTTGC AATTACGTAT GATCAGGCCA CTGGAGAAAT TGTAAAAGAA
TGCGATGGAG CTGATGAGGA AGGTGCGAAT GAATACCTTA CATGTATAGA GCCTCAGGGA
GAAGGCAATA ACCAATGGAC CTGGTAA
|
|---|
| Protein sequence | MNLLHEYLKN PRVRKVLSSK PGNKGFSLVE LVVVIAVLAI LSAVAIPNFI SVQSKAQISA
VKNGLVNGIK ECVVAYLDDP ENIPEFAEIN AFNGDYTGYA IEPLAEDQEG CFEAEGIHAA
GVLPTFAITY DQATGEIVKE CDGADEEGAN EYLTCIEPQG EGNNQWTW
|
|---|
| |