| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_04961 |
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| Symbol | |
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| ID | 5730552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9211 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009976 |
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| Strand | - |
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| Start bp | 464840 |
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| End bp | 466117 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 641284855 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001550381 |
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| Protein GI | 159903037 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.147427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCCTG TCGCCTCCAA AAAAACAGTT GCAAAGGCTA AAACCAAAGC AACAAAAAAG
TCCAGCACAA AGGCTGGTGA GAGTAAAACA TTGAAAAAAG GGAAATCAAT CTCCGTTACA
AAAAAATCAA AGCCTAGCTC TACGAAGAAA GCTTCCTCAT CGCAAGACAA AGACTTAGAT
CTCGCAGCGG ACCAATTACT TGCAGAAGCT AATAACAATG AAATCAATCC AGAAACAGAA
ATAACCTTGA ATATGAATTC TCTGGATGAT TCAAATGACC AAGAGGCTAG TGACAAAACT
CTTGCAAGTA TAAAAATTGG ACCAAAGGGA GTTTATACAG AAGACTCAAT CAGAGTGTAT
TTACAAGAAA TTGGCCGCAT TAGATTACTT AGGCCTGATG AAGAAATTGA ACTCGCAAGG
AAGATTGCAG ATCTTCTAAA TTTAGAAGAA ATCGCTATCC AGTTTGAAAG CGAAAATGGA
CATTACCCCT CCAAAAAAGA GTGGGCTGCG TTGGTTGAAA TGCCAGTCAT AAGGTTTCGC
CGGAGACTAA TGCTTGGAAG GCGTGCGAAA GAAAAAATGG TTCAATCAAA CCTTCGCTTA
GTTGTTTCAA TAGCTAAAAA ATATATGAAT AGAGGACTTT CATTCCAAGA TCTGATTCAA
GAAGGAAGTC TGGGGCTTAT TCGTGCAGCA GAGAAATTCG ACCATGAAAA AGGCTATAAG
TTCTCCACTT ATGCAACTTG GTGGATTCGT CAAGCAATTA CAAGAGCGAT TGCAGATCAA
AGTAGAACAA TTAGGCTTCC TGTCCACCTT TACGAAACAA TTTCAAGAAT CAAAAAAACA
ACCAAAGTTC TAAGTCAAGA ATTTGGGAGA AAACCTTCAG AAGAAGAAAT TGCAGAGAGT
ATGGAGATGA CTATTGAAAA GCTTCGCTTT ATTGCGAAGA GTGCTCAGTT ACCGATTTCT
TTAGAAACTC CTATAGGTAA AGAAGAAGAC TCACGTCTTG GTGATTTCAT TGAATCAGAC
TCAGAGAACC CTGAATTAGA TGTTGCCAAA ACACTACTTC GCGAGGACCT AGAAGGAGTT
CTCGCAACTC TGAGCCCAAG AGAACGAGAT GTCCTAAGAC TTCGTTATGG ACTTGATGAT
GGTCGTATGA AGACCCTTGA AGAAATTGGG CAAATATTTG ATGTAACCCG CGAGCGTATC
CGTCAAATTG AAGCAAAAGC TCTACGCAAA CTTCGTCATC CAAATCGCAA TGGAGTGCTT
AAAGAATACA TTAAATAA
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| Protein sequence | MSPVASKKTV AKAKTKATKK SSTKAGESKT LKKGKSISVT KKSKPSSTKK ASSSQDKDLD
LAADQLLAEA NNNEINPETE ITLNMNSLDD SNDQEASDKT LASIKIGPKG VYTEDSIRVY
LQEIGRIRLL RPDEEIELAR KIADLLNLEE IAIQFESENG HYPSKKEWAA LVEMPVIRFR
RRLMLGRRAK EKMVQSNLRL VVSIAKKYMN RGLSFQDLIQ EGSLGLIRAA EKFDHEKGYK
FSTYATWWIR QAITRAIADQ SRTIRLPVHL YETISRIKKT TKVLSQEFGR KPSEEEIAES
MEMTIEKLRF IAKSAQLPIS LETPIGKEED SRLGDFIESD SENPELDVAK TLLREDLEGV
LATLSPRERD VLRLRYGLDD GRMKTLEEIG QIFDVTRERI RQIEAKALRK LRHPNRNGVL
KEYIK
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