| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_00761 |
|---|
| Symbol | def |
|---|
| ID | 5730220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9211 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009976 |
|---|
| Strand | - |
|---|
| Start bp | 81287 |
|---|
| End bp | 81892 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641284419 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_001549961 |
|---|
| Protein GI | 159902617 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.264235 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.886891 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCTAGAA GTTTTGCTCA ACTCGCAAAG AATGCCGAAA AAGGCAGCAA TAGTATTGCT
GTTTCAAAAG AGCCTACTGA AAAACCTTCT CTGAAGATAC ATACACTAGG CAACTTAGAA
CTGAGACAAA CTGCGCAACG AGTCAGCAAA GTGGATAACT CTATAAGAAC ATTAATAAAA
AAAATGCTCC ATAGCATGTA TTCAGCTAAA GGTATAGGTT TAGCAGCGCC CCAAGTAGGA
ATTCATAAAC AACTTCTAGT CATAGATTTA GATATTGAAA ACTCTACTAC TCCTCCAATT
GTTCTTATTA ATCCTCAAAT TACTGACTTT AGTGCAGCAA TAGAAACTTA TGAAGAAGGT
TGCCTTAGTA TCCCTGGAGT ATATCTAAAT GTAATTAGAC CATCATCTAT TAAATTAAAT
TTCCGTGATG AAATGGGAAG ACCTAAGAAA ATGAATGCGG ATGGTCTATT GTCTAGATGT
ATCCAACATG AAATGGACCA CCTCAATGGA GTCCTTTTTG TTGATAGAGT TACTAATGAA
AATGATCTAA GCAAGGAATT GCAAGAACAT GGCTTTAATA GTGAAGATGT AATTTCAATT
ATCTAA
|
|---|
| Protein sequence | MARSFAQLAK NAEKGSNSIA VSKEPTEKPS LKIHTLGNLE LRQTAQRVSK VDNSIRTLIK
KMLHSMYSAK GIGLAAPQVG IHKQLLVIDL DIENSTTPPI VLINPQITDF SAAIETYEEG
CLSIPGVYLN VIRPSSIKLN FRDEMGRPKK MNADGLLSRC IQHEMDHLNG VLFVDRVTNE
NDLSKELQEH GFNSEDVISI I
|
|---|
| |