| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_1340 |
|---|
| Symbol | |
|---|
| ID | 5737491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | - |
|---|
| Start bp | 1247806 |
|---|
| End bp | 1248966 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641283835 |
|---|
| Product | chorismate synthase |
|---|
| Protein accession | YP_001549385 |
|---|
| Protein GI | 159905723 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0082] Chorismate synthase |
|---|
| TIGRFAM ID | [TIGR00033] chorismate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATTATG TTTATATCTT ACGAAATCAC GGTGATACTT TGAACACTTT TGGGGATAAT
TTTAGAGTTA CTACCTGGGG AGAAAGCCAC GGAAAAGCAT TGGGTGCCGT AATCGATGGA
TGTCCTGCAA ATCTACCCAT TTCAGAAGAA GATATCCAAA ATGAACTCAA TAGAAGAAGA
CCTGGATACA GTATCTTCTC GACACCGCGA AAAGAAGAAG ATAAAGTAGA AATTCTTTCA
GGACTTTTCG AAGGAAAAAC TACCGGAACT CCAATTTCAG GGCTTGTATT TAACAAAGGA
CAAAAATCAA AAGATTACAG TAAAATTAAG AATACCCCAA GACCAGGACA TGCTGATTTA
AACTACTTTT TAAAATACGG AAATTACGAC TACAGGGGCG GTGGACGAAG CAGCGGAAGA
ACCACGATTG GAAACGTGAT TGGCGGAGCA GTTGCTAAAA AATTAATTGA ATTTACGCAT
AATATCAAAA TAATTGGGTA TTCTACCAAA ATTGGAAAAA TAAATGGAGA TTTTGACTAC
TACAAAAACC CTGAATTCTT TGAAAATGAT TCAAATATAG AAAAATTATT TGAAAAAATC
GAAAATAATC CCCTAAGGTG TCCTTCAAAA AATAGCAATG CGATGAAAGA TTACGTCCTT
GACGCGATGG ATAAAAAAGA CAGCGTTGGA GGAATAATTG AAATAATTAT AAAAGGAATT
CCACAAGGCG TTGGAAATCC CGCATTTAAC AAATTAGAAG GAAAACTTGG AAGTGCATTC
ATTGGAATTA ATGCGGTGAA AGGATTTGAA ATAGGCAGAG GTTTTGAATC TTCAGAATTA
TACGGCAGTG AAATGAACGA TGAATACTAC ATGAATGAAA ATTCAGTAAA TGAAAAAACT
AACAATGCTG GAGGAATTAT CGGTGGAATA AGTACCGGTT CTCCAGTTGT TCTTAGAGTT
TCAATAAAAC CAACTCCATC AATTTCAAAA ATTCAAGAAA GTGTGAATTT AATATCGAAT
GAAAATGAAA AAATCGAAAT TGGCGGAAGA CACGACCCGA TAATCGTTCC AAGAGTAATT
CCTGTACTCG AATCAATGGC TGCAATAACA GTTGCAGATT TAATGATTTC AGGCGGATAC
ATTAACCCTT GCAGAATATA A
|
|---|
| Protein sequence | MYYVYILRNH GDTLNTFGDN FRVTTWGESH GKALGAVIDG CPANLPISEE DIQNELNRRR
PGYSIFSTPR KEEDKVEILS GLFEGKTTGT PISGLVFNKG QKSKDYSKIK NTPRPGHADL
NYFLKYGNYD YRGGGRSSGR TTIGNVIGGA VAKKLIEFTH NIKIIGYSTK IGKINGDFDY
YKNPEFFEND SNIEKLFEKI ENNPLRCPSK NSNAMKDYVL DAMDKKDSVG GIIEIIIKGI
PQGVGNPAFN KLEGKLGSAF IGINAVKGFE IGRGFESSEL YGSEMNDEYY MNENSVNEKT
NNAGGIIGGI STGSPVVLRV SIKPTPSISK IQESVNLISN ENEKIEIGGR HDPIIVPRVI
PVLESMAAIT VADLMISGGY INPCRI
|
|---|
| |