Gene MmarC6_1312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmarC6_1312 
Symbol 
ID5737285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanococcus maripaludis C6 
KingdomArchaea 
Replicon accessionNC_009975 
Strand
Start bp1221219 
End bp1222718 
Gene Length1500 bp 
Protein Length499 aa 
Translation table11 
GC content37% 
IMG OID641283807 
ProductDNA-directed RNA polymerase subunit beta'' 
Protein accessionYP_001549357 
Protein GI159905695 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGTCCC GTGTCGTTGT TGATGCATTT TTTAAAGAGA ACAGTTTAGT AAAACACCAC 
ATCGATTCCT ACGATGATTT TGTGAAGAAT AAAATTCAAA AGATCATCGA TGAGGTAACT
GGTGTCGAAA CAGAAATTAA AGGAGGATAC AAAGTATCCT TTGATAAAGT GAGAGTTACA
AAACCGATAA ATAAAGAAGC TGATGGTTCT GTAAAAGAAA TAACACCTAT GGAAGCGAGA
ATTAGAAACC TTGCATACTC TGCACCGCTT TACCTTGAAA TGATACCAAC AGTTGGCGAA
GATGAAGAAG AAAAAGTATT ATCACCTGTT GAAGTTTACA TTGGAGAACT TCCAGTAATG
CTTGGTTCAG AAATCTGCCA CTTGTGCGGA AAATCAGAAG AAGAATTGAT AAAATACGGC
GAAGATACAA AAGATCCTTT AGGTTATTTT ATTGTTAACG GTTCAGAAAA AGCGGTTGTT
GCTCAAGAAG ACCTTATTCC TAACAGAATT ATATGTGAAA AGGTAGAAAA AAACAACAAA
ATCGTAGATA TCGCAAAAGT ATTTTCAACT AGACATGGAT TCAGGGCATT ATGTACTGTT
GAGAGAAATC CTGATGGATT ATTAAATGTT TCATTCCCGG GAATGCCTAG CACAATTCCA
CTAGTTATAT TAATGAGGGC ACTTGGTGCA GAATCAGATA GGGAGATTAT CGAATTAATT
TCGGACGAAC CAACAGTTGT CATGCAATTA ATTGCAAACT TACAGGAAGC AAGAGAAGAG
CATGCAATAA ACACGACTGA AGATGCACTC GAACATATCG GAAAAAGAGT AGCTCCAGGA
CAGCCTAAAG AATACAAGTT AAAAAGAGCA GAAACAATTC TTTGCAACTA TTTATTACCA
CATATGGGCG TAGAATCTGA AAAATTAGGT GCTAAATGTA AATATCTTGG AAGAATGGCT
AAAAACTCAA TCGAACTCTA CTTAGGATTA AGGGTTGAAG ATGATAAGGA TCATTATTCA
AATAAAAGAT TAAAATTAGC TGGAGACTTG ATGGAAGACT TATTTAGACA TTCATTCAAC
CAGTTAATTA AAGATATCAA ATACCAGCTC GAAAGACAGG CAATAAGAAA CAAAGAACCT
TCAATTCAGG CTGCAGTTAG AAGCGATGTT TTAACTGAAA GAATGAGACA TGCGATGGCT
ACCGGAAACT GGGTAGGTGG AAGAACAGGG GTATCCCAAC TTCTCGATAG AACCAGTTAC
CTTGCAACAG TATCCCAGTT AAGAAGAGTT GTATCCCCAC TTTCAAGATC ACAACCTCAC
TTCGAAGCAA GGGACTTGCA CGCAACCCAA TGGGGTAAAA TATGTCCATC CGAAACACCA
GAAGGTCCAA ACTGTGGTCT GGTAAAAAAC CTTGCTGTAA TGTGCAAAGT AACTACTGAT
GAAGGCGACG ATAGCGTAAT CGAATTATTA AGAGAACTCG GTCTCACAAA GGAAAACTAA
 
Protein sequence
MESRVVVDAF FKENSLVKHH IDSYDDFVKN KIQKIIDEVT GVETEIKGGY KVSFDKVRVT 
KPINKEADGS VKEITPMEAR IRNLAYSAPL YLEMIPTVGE DEEEKVLSPV EVYIGELPVM
LGSEICHLCG KSEEELIKYG EDTKDPLGYF IVNGSEKAVV AQEDLIPNRI ICEKVEKNNK
IVDIAKVFST RHGFRALCTV ERNPDGLLNV SFPGMPSTIP LVILMRALGA ESDREIIELI
SDEPTVVMQL IANLQEAREE HAINTTEDAL EHIGKRVAPG QPKEYKLKRA ETILCNYLLP
HMGVESEKLG AKCKYLGRMA KNSIELYLGL RVEDDKDHYS NKRLKLAGDL MEDLFRHSFN
QLIKDIKYQL ERQAIRNKEP SIQAAVRSDV LTERMRHAMA TGNWVGGRTG VSQLLDRTSY
LATVSQLRRV VSPLSRSQPH FEARDLHATQ WGKICPSETP EGPNCGLVKN LAVMCKVTTD
EGDDSVIELL RELGLTKEN