| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_1299 |
|---|
| Symbol | rnhB |
|---|
| ID | 5737404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | - |
|---|
| Start bp | 1205697 |
|---|
| End bp | 1206416 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 641283794 |
|---|
| Product | ribonuclease HII |
|---|
| Protein accession | YP_001549344 |
|---|
| Protein GI | 159905682 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0164] Ribonuclease HII |
|---|
| TIGRFAM ID | [TIGR00716] ribonuclease HIII
[TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 0.554305 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAGG ATATTAAAAA TAATTTAAAT AATTTGGACG AATTTAGCGG CAAAATAATC
GTTGGACTTG ATGAAGCAGG TCGTGGACCG GTAATCGGGC CAATGGTAAT TGCTTCAGTA
AAAATTAATG AAAAAGATCT TTATAAATTA CAAGATCTAG GATTAAAGGA CAGTAAACAA
CTTTCGAAAA AAAAGCGTGA AGAACTTTAT GTAAAAATAA GCGAGATATG CAATGTTAAA
AAGATTGTTA TCGCCCCTGA AAAAATTGAC GAACAGATGG AAATTACTAA TTTAAATAAG
ATTGAATTAA GCGCTTTTTC AAAGCTTGCG AACCATTTCA TCAAGGAAAA TGAAAATATA
TCAATTTATA TCGATGCGTG CAGTAGCAAC GAACAGTCAT TTTCAAATCA ATTTAAAGCA
AAGCTTATTA ACAAAAACGT TGAAATCATT GCTGAACACA AAGCTGATGA AAATTACAAA
ATAGTATCTG CTGCATCAAT TATTGCCAAA GTAACTCGTG ATAATGTTAT TGAAGAATAT
AAAAAGACAT TTGGTGAAAT TGGAAGTGGA TATCCAAGCG ATCCAAAAAC GAAAAAATTT
TTGAAAAAGT ACGTACACGA AAACAAGGGC CTGCCAAAAA TTGCAAGAAA AAGCTGGGCA
ACTTCAAAAA ATCTTTTAAA AGAAATAGAA GAATCTAAAA TATTTCAATG GGTGAAATAA
|
|---|
| Protein sequence | MNEDIKNNLN NLDEFSGKII VGLDEAGRGP VIGPMVIASV KINEKDLYKL QDLGLKDSKQ
LSKKKREELY VKISEICNVK KIVIAPEKID EQMEITNLNK IELSAFSKLA NHFIKENENI
SIYIDACSSN EQSFSNQFKA KLINKNVEII AEHKADENYK IVSAASIIAK VTRDNVIEEY
KKTFGEIGSG YPSDPKTKKF LKKYVHENKG LPKIARKSWA TSKNLLKEIE ESKIFQWVK
|
|---|
| |