Gene MmarC6_1258 details

Gene Information

• Locus tag: MmarC6_1258
• Symbol: rpl6p
• ID: 5738013
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C6
• Kingdom: Archaea
• Replicon accession: NC_009975
• Strand: -
• Start bp: 1172199
• End bp: 1172747
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 641283753
• Product: 50S ribosomal protein L6P
• Protein accession: YP_001549303
• Protein GI: 159905641
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03653] archaeal ribosomal protein L6P

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 0.032606
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAGTTG CAGCTTTAAT AAGGGAAGAA ATCGAAATTC CTGCAAACGT CAACGTTGAA 
ATTAACGGCA ATACCGTTGC TGTTAAATCA GGTGCAAAAG AACTTAAAAG AGATTTGTTG 
TACCCTGGAA TCGAAATAAG CACAGAAGAC GGAAAAGTTG TTATTGAGTG TACATTCCCA 
AGAAAGGCAC AAACCGCAAT TGTTGGAACA TACAGATCAC ACATTCAAAA CATGATCAAA 
GGTGTTACTG ACGGATTTGA ATACAAATTA GTAATCAGAT ACGCTCACTT CCCAATGAAA 
GTTAGTGCTA AAGGAAACAC TGTAATGATT GACAACTTCT TAGGAGAAAA ATACACTAGA 
ACTGCTAAAA TCATGGATGG AGTCACTGTA AAAGTTAGTG GTGAAGAAGT GATTGTAAGT 
GGAGCTAACA AAGAATTTGT TGGTCAAACC GCTGCAAACA TCGAACAAGC GACTAAAGTT 
AAAGGAAGAG ACACAAGAAT ATTCCAAGAT GGCATCTACA TTGTAGAAAA AGCAGGGAAA 
GTATTATAA 

 

Protein sequence

MPVAALIREE IEIPANVNVE INGNTVAVKS GAKELKRDLL YPGIEISTED GKVVIECTFP 
RKAQTAIVGT YRSHIQNMIK GVTDGFEYKL VIRYAHFPMK VSAKGNTVMI DNFLGEKYTR 
TAKIMDGVTV KVSGEEVIVS GANKEFVGQT AANIEQATKV KGRDTRIFQD GIYIVEKAGK 
VL