Gene MmarC6_0935 details

Gene Information

• Locus tag: MmarC6_0935
• Symbol: truD
• ID: 5738669
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C6
• Kingdom: Archaea
• Replicon accession: NC_009975
• Strand: +
• Start bp: 876068
• End bp: 877237
• Gene Length: 1170 bp
• Protein Length: 389 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 641283415
• Product: tRNA pseudouridine synthase D
• Protein accession: YP_001548982
• Protein GI: 159905320
• COG category: [S] Function unknown
• COG ID: [COG0585] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR00094] tRNA pseudouridine synthase, TruD family

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTTA GACAAAAACA CGAAGATTTC ATCGTAAATG AGATTTTAGA TTATGAATTG 
GATGATTCTG GAAATTATTC GTTATATAAA CTTCAAAAAA ACGGAATAGA AAATTTAAAA 
GCGATATCTT ACCTTTCAAA AAATTTTGAA GTTCCAACAA AAGAAATTGG GTACTGTGGT 
TTAAAGGATA GACACGCAAT TACAACACAG TACGTTTCTA TTCCAAACGA ATATGGTAAA 
TTGTCCCTCA ATGAAGATAA TTTAAAGCTT GAATATATTG GAAACATTGA AAAACCCTTA 
AAAATCGGAA AATTGTATGG AAACAGGTTT GAAATCATAG CAAGGGCTAT TGATAAAAAC 
GAATTTTTAA AGATTGCAGA CAATATGCGA GCTTTAAGTT TTGGCGCGCC AAATTACTAC 
GACGACCAGA GATTTGGAAG TGTATTTAAC GGTAAATTTA TAGCAAAGGA AATTTTGAAA 
GGAAATTACG AAGAAGTTGT TAAAATACTT TTAACAAGCT ATACAAAAAG TGAAAATAAG 
CAGTTAAAGG ATTTGAAAAG ATTTATCGCT AAAAATTGGG GCAACTGGGA TGAATGTCTC 
AATTATATCG ATAAAAAGCA GATAAAAAGT AAAATGTTTA GAAACATGGT TAAATCACTA 
AAATATGAAA ATGATTTCAA AAAATCGTTC AAATATGTTG ATAATCGATT GAAAGAGCTT 
TTTATCTCCG CATACCAAAG TTACCTCTGG AACGAATGTT TAAAAGAGTT TTTAAAAGAA 
TTTATTCCAA AAGACAGTAG AAAATACGTA GATTATTCAT GCGGAACATT TTTATTTTAC 
GAAACCCTTG ACGAGGAATT ATTTGATAAA TTAAAAGAAA TGGATTTTCC AACAATAGTT 
TCAGATGTAG AATACACCGA TTCAGAAAAA AAGATAATAA ATGCAATTTT GAAGAAAGAA 
CGGATTAAAT TTTCAGATTT TGAGAAATTA GACTTTGGAA AATTAAAATA CACGAAAAGA 
CCGATTATTT CAATTCCTGA AGAGGTCAAT ACTGGAACGT TCAAATCTGA TGAATTAAAC 
TCAAAAAAAT ATAAAATAAC TTTAGAATTT AGTCTAAAGA AAGGAAGCTA TGCAACTATA 
ATTTTAAAAA GGGTTTTTAA TATTTTATAA 

 

Protein sequence

MKFRQKHEDF IVNEILDYEL DDSGNYSLYK LQKNGIENLK AISYLSKNFE VPTKEIGYCG 
LKDRHAITTQ YVSIPNEYGK LSLNEDNLKL EYIGNIEKPL KIGKLYGNRF EIIARAIDKN 
EFLKIADNMR ALSFGAPNYY DDQRFGSVFN GKFIAKEILK GNYEEVVKIL LTSYTKSENK 
QLKDLKRFIA KNWGNWDECL NYIDKKQIKS KMFRNMVKSL KYENDFKKSF KYVDNRLKEL 
FISAYQSYLW NECLKEFLKE FIPKDSRKYV DYSCGTFLFY ETLDEELFDK LKEMDFPTIV 
SDVEYTDSEK KIINAILKKE RIKFSDFEKL DFGKLKYTKR PIISIPEEVN TGTFKSDELN 
SKKYKITLEF SLKKGSYATI ILKRVFNIL