| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_0853 |
|---|
| Symbol | |
|---|
| ID | 5738009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | + |
|---|
| Start bp | 794437 |
|---|
| End bp | 795849 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641283328 |
|---|
| Product | putative pseudouridylate synthase |
|---|
| Protein accession | YP_001548902 |
|---|
| Protein GI | 159905240 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1258] Predicted pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR01213] conserved hypothetical protein TIGR01213 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0147305 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATAG ATTATTCTGT TTTAAAAAAA TACCCATTGT GCGACAGATG TTTTGGAAGA
CTTTATGGAA AACTTATTAG GTCTAGTAAT TTTGAGAGAG GACACGCCTT AAAACTTGCT
AAAGCAATCG AACTTGAAGA AGATTTAAGA ACTGCTCTTG AAAAAATGAA TGAAACACAT
GAAACTTCTG AAGTGAATTC AGCAGATCTT GGAAAATTGG AAGAAATCAA AGAACTGATG
TATGCTCTTC ATAAAACCGG CAATTTAGGA ATAAAACTTG ATTTAATTGA TGATATCGAG
AAATACGAAA CAAAATTTAA AAATGAAGCC GAATATGAAA AAACCGAAGA GTGCGAAGAC
CTCTGTCCAT GGTGTAAGGG AATTTTTGAA CCTGAAAATA TTGAAAAAGT TGCTGAAAAT
GTAGTTAATG CACTTTCTGA ATACGAATTT GACAGTTTCT TAGTAGGTAC AAAACTTCCA
AAAAGGTTTA AAGAACTTGA AAATGAGATT GAAACTCCAT TTATGGAAAG TATACGACAA
GAATTTGGAA GAGAACTTGG AAAAGTTGTA GTTCCATTGG TCAAAAGGCG AGTGGACAAA
GAAAACCCCG ACGTTGTAGT AATGGTAAAT CCATACAACC AGAAAGTTAA GCTTCAGGTA
AATCCGGTAT TTATCAAAGG AAGATACAAA AAGCTTGTTA GGGGAATCCC GCAAAGCCAC
TGGCATTGCA GGTCTTGCAA AGGAAAAGGC TGTGAAAAAT GTAACTTTAC AGGAAAACAG
TATATGACTT CAGTTGAAGA AATCATTGCA GAACCGTTCA TGGACGTTAT GAAAGGAAGT
TCAGAAGCAC TTCATGGTGC AGGGCGAGAA GACATCGACG TTAGAATGCT TGGAAATGGA
AGGCCTTTTG TAATTGAAAT AAAAGAACCA AAAGTTAGAA AAGTTAATTT AGAAGAACTT
GCTTCAAAAG TTAATGCATC TGGAACAGTT GAAATAATAA ACGTTGAATA CGGCGTTAAA
AAAGACGTTC ATTTCTTCAA AAATGAACCC CACAAAAAAA CATATCTTGC TCAAGTTGAG
TGCGAAGAAA AAGTATCGAG CGAAGAAGTG GCTGAATTAG TAAATAAACT CGAAGATCTC
GTAATTGATC AAAGAACGCC CGATAGAGTC TCACATCGAA GGGCCGACCT CGTGCGCGTG
CGTAAGGTAT ATAAAGCTTG GCCGCATATG ATTGATGATT ATAACTTTGA ACTTAAGATA
TTCTGCGATG GCGGATTATA CATCAAAGAA CTCATTAGCA GCGATGAAGG GAGAACTACT
CCTTCCGTTT CGGAATTGCT AAACAATAAA TGCATCTGTA AATTTTTAGA TGTTTTGGAT
GTTCACGACT ATGATGATGT AGAAGATATC TAA
|
|---|
| Protein sequence | MNIDYSVLKK YPLCDRCFGR LYGKLIRSSN FERGHALKLA KAIELEEDLR TALEKMNETH
ETSEVNSADL GKLEEIKELM YALHKTGNLG IKLDLIDDIE KYETKFKNEA EYEKTEECED
LCPWCKGIFE PENIEKVAEN VVNALSEYEF DSFLVGTKLP KRFKELENEI ETPFMESIRQ
EFGRELGKVV VPLVKRRVDK ENPDVVVMVN PYNQKVKLQV NPVFIKGRYK KLVRGIPQSH
WHCRSCKGKG CEKCNFTGKQ YMTSVEEIIA EPFMDVMKGS SEALHGAGRE DIDVRMLGNG
RPFVIEIKEP KVRKVNLEEL ASKVNASGTV EIINVEYGVK KDVHFFKNEP HKKTYLAQVE
CEEKVSSEEV AELVNKLEDL VIDQRTPDRV SHRRADLVRV RKVYKAWPHM IDDYNFELKI
FCDGGLYIKE LISSDEGRTT PSVSELLNNK CICKFLDVLD VHDYDDVEDI
|
|---|
| |