| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_0436 |
|---|
| Symbol | |
|---|
| ID | 5738373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | - |
|---|
| Start bp | 399200 |
|---|
| End bp | 400171 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641282897 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001548486 |
|---|
| Protein GI | 159904824 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.788545 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAA ATAAGATGTT AAAACTGAAG AAACCCGAAC CAGAACCAAT CACGGAAACA
AAAGAAATGA ACAAGTGGGT TTCTGAATTT ATCGATGCAA GAGAATTTGA CGGGATAAAA
AAGACAACGA TTACAAACGA TGTAACTCGA TTGAGGGTTT TTATCGACTT TTCAACCCAG
AAATTAAATA AAGAGTTAGA TCAACTCCAA AACGTAGATT TTATCAAATT TTTTAACTAT
CTGGACAAAG AAAAAGGAAT TAAGAGAAAC ACTCAAAAAA GATATTTTGA TTTACTCAAA
GTATTTTATA AAATTAACAG GCTTTCAAAC TTTGATGAAT TCAAAGAAGA CAGTGAAGAG
AGAAAACGTT TCAAACGGTG TGAAGTAGCC CACTATGATT TTATAGATCG GGAAACTTTA
ACAAAAATTA TCGACATGAT TGCAGAAGGT AGGAGCCAAA CAAAGGTACG GGACGTTATA
ATTTTAAGAA TGCTCTGGGA TACTGGTTGC AGGGCTTCTG AAGTTGTTAA TTTAACTTAT
TTTGATGTGG ACATGGATAC AGGGAAAATA AAGGTCAGAA ACACTAAAGG AAAAGTTGAG
AGAACTGTTG GCTGTTCAAA AGACACGTTA AATCTTTTAA AATACTATTC AAATCATCAA
ATTTATAAAA CTCCAAAGGA CCACATCTTC AAAAATCGAA AAGGCGAAGC AAAAATCGAA
GTAAACTGGA TTTCTGAAGT TTTTAGAAAA GCTGTTAGAA AATTAAAAGA ATCTGGAGAT
ATTCCAAATA ATAAAAAATT GGTAGTCCAT TCATTAAGGC ACGGAAGAGC AGTCGACCTT
TTAGATAAGG GCTTTCCAAT CGATATTGTA AAGGAATATC TTGGACATTC ATCCCTTGAA
ACTACTTTAT TCTATGCTCA TGCAAAAGAA CGGGAGAAAA AGATGTTGGA TGACATAATG
AAGAGTTTAT AG
|
|---|
| Protein sequence | MDINKMLKLK KPEPEPITET KEMNKWVSEF IDAREFDGIK KTTITNDVTR LRVFIDFSTQ
KLNKELDQLQ NVDFIKFFNY LDKEKGIKRN TQKRYFDLLK VFYKINRLSN FDEFKEDSEE
RKRFKRCEVA HYDFIDRETL TKIIDMIAEG RSQTKVRDVI ILRMLWDTGC RASEVVNLTY
FDVDMDTGKI KVRNTKGKVE RTVGCSKDTL NLLKYYSNHQ IYKTPKDHIF KNRKGEAKIE
VNWISEVFRK AVRKLKESGD IPNNKKLVVH SLRHGRAVDL LDKGFPIDIV KEYLGHSSLE
TTLFYAHAKE REKKMLDDIM KSL
|
|---|
| |