Gene MmarC6_0280 details

Gene Information

• Locus tag: MmarC6_0280
• ID: 5738889
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C6
• Kingdom: Archaea
• Replicon accession: NC_009975
• Strand: +
• Start bp: 254364
• End bp: 254888
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 25%
• IMG OID: 641282744
• Product: 2'-5' RNA ligase
• Protein accession: YP_001548333
• Protein GI: 159904671
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1514] 2'-5' RNA ligase
• TIGRFAM ID: [TIGR02258] 2'-5' RNA ligase

Plasmid Coverage information

• Num covering plasmid clones: 48
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGATGTT TTCTTGCTAT TGAATTAAAT TCCAATTTAA AAGAAAATTT GGAAAATTTA 
AAAAAACAAT TTAACTTAAA AGGCATAAAA ACCGTTGAAA AAGAGAATTT ACATATAACT 
GTGAAATTTT TAGGAGATGT TGACGATAAA AAACTTGAAG AAATACTTGA ATCTAATTTA 
AAAATTAAAA AAGTTATTTC TGAGATAAAA GGAGTTGGAA CATTTCCAAA CGAAGAATAT 
ATCCGTGTGA TATGGGTTGG AACAACAAAT CTTGAAGAAA CTTTTAAAAA TATTGATGAA 
AAACTTTTTA AATTGGGTTT TAAAAAAGAA AAAAGTTACG ATCCACACAT TACACTTGGA 
AGGGTAAAAT TTATCGAAAA TGATTCAAAA GAAACATTGC AAAAATTAAT TGAAAAAAAT 
AAACACGTAA ATTTCGGAAA AATAGAAATA AATTCAGTTT CACTCATGAA AAGTAATTTA 
ACTAAAGAGG GTCCAGTTTA TGAAACAGTT AAACGTTGGG AATAA 

 

Protein sequence

MRCFLAIELN SNLKENLENL KKQFNLKGIK TVEKENLHIT VKFLGDVDDK KLEEILESNL 
KIKKVISEIK GVGTFPNEEY IRVIWVGTTN LEETFKNIDE KLFKLGFKKE KSYDPHITLG 
RVKFIENDSK ETLQKLIEKN KHVNFGKIEI NSVSLMKSNL TKEGPVYETV KRWE