| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_0153 |
|---|
| Symbol | |
|---|
| ID | 5738222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | + |
|---|
| Start bp | 130020 |
|---|
| End bp | 131363 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641282618 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001548208 |
|---|
| Protein GI | 159904546 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.226722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCAGG TTCGAAAATT AAAAAGTGAA AATATTAATA AACTCCTGTT GAGGTACGTC
ATCCCCTCAA TTGCCGGTAC CGTCATTATT GGAATTTACA GCATAATCGA CGGGATATTT
ATTGGAAGAA CCGTTGGAAC TGGGGGGCTT GCAGGGTTAA CGCTCGCATT CCCCGTTTTA
ATTGCAATTG GGGCCATCGG GATTATGATT GGAGCAGGAA CTTCTGCAAT AATTTCGATA
AATCTTGGAA AAAAAGATTA TGAAATGGCT TCCCGCATTT TAAAAACTGC GTTTGCATAT
ATTATTTTAA TAAGCTTCTT AATTACGTTT TTGGGATTAT TATTTATCGA ACCAGTTATT
TTGAGCATGC ATCTTGCGAA AAATTTGGAA AACTACGTTT TACAGTATTC AAAAATAATA
ATTATCGGGG CAATTGCACA AATTTCTGCG ATATCTCTTG ACCCGATACT TCGAAACGAC
GGCTTTCCAA AAAAATCCAT GATTATATTG ACTTTAATGT CATTATTTAA CATACTACTC
GATTATATCT TGATAGTGGT ATTTAATTTT GGAGTTATGG GGGCAGCTAC TGCAACTGTA
CTTGCACAGG CCCTTGGATC AATTTTATAC TTAAAACATT TCTTAACTGG CAAGTCAAAT
GTAAAAATTG GAAAAAACAA TCCATTTTCT GAATTTTCAA TTATAAAACG AATTACAAAA
ACAGGATTTT CACCATTTAT TATGGAACTT GCATTTGGAT TGCTGATGAT AGTGCATAAT
ATCCAGTTTA TACGATACGG AAGTTCTTTG GACGTTTCTG CATACGGTAT TGTAATATAT
ATCACATCAT TTCTATACAT GGTCTATTTA GGGATTTCAG AAGGCGTTCA ACCACTAATT
AGCTATAATT ACGGGGCTAA AAAATTTAAC AGGGTTTTTG AAATATTAAA AAAAGCAGTA
TTTGTTAATG CGATACTTGG TATTTGTTCA TTTTTAACGA TTTTAAAGTT CCCAAACCTT
TTAATAAAAA TTTTTAATCC GAATGATACG AATTTAATAG CAACAACCAC AGTAGGCCTT
GAGATACATA ATTTCGCAAT TTTAATTCTT GGAATATCAA TGGTTTTAAC GATGTATTTT
TTAGCTACAG AACAGCCAAA AATTGCGGGT TTTTTGTCTC TTGGAAGAAC CATAATATTT
ATTCTTCCTG CAATCATTAT ATTCCCAATA TATTTTGGAA TTAAAGGAAT ATGGTGGGCC
ACCGTATTTT CAGAGTACAT GAGTCTTATA TTTACCATTT ACTTCATATC TAAAGAGCTT
AAAAAGATAA AGAAAATAAG TTAG
|
|---|
| Protein sequence | MEQVRKLKSE NINKLLLRYV IPSIAGTVII GIYSIIDGIF IGRTVGTGGL AGLTLAFPVL
IAIGAIGIMI GAGTSAIISI NLGKKDYEMA SRILKTAFAY IILISFLITF LGLLFIEPVI
LSMHLAKNLE NYVLQYSKII IIGAIAQISA ISLDPILRND GFPKKSMIIL TLMSLFNILL
DYILIVVFNF GVMGAATATV LAQALGSILY LKHFLTGKSN VKIGKNNPFS EFSIIKRITK
TGFSPFIMEL AFGLLMIVHN IQFIRYGSSL DVSAYGIVIY ITSFLYMVYL GISEGVQPLI
SYNYGAKKFN RVFEILKKAV FVNAILGICS FLTILKFPNL LIKIFNPNDT NLIATTTVGL
EIHNFAILIL GISMVLTMYF LATEQPKIAG FLSLGRTIIF ILPAIIIFPI YFGIKGIWWA
TVFSEYMSLI FTIYFISKEL KKIKKIS
|
|---|
| |