Gene MmarC6_0054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmarC6_0054 
Symbol 
ID5738204 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanococcus maripaludis C6 
KingdomArchaea 
Replicon accessionNC_009975 
Strand
Start bp46103 
End bp46783 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content34% 
IMG OID641282522 
Productputative transcriptional regulator 
Protein accessionYP_001548112 
Protein GI159904450 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.00302392 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGAAA AGTTTTTAAA ATCACATCTT AATCTCTCTG GAAAAATTGA AGGGCTGCAA 
AGAAAAGACG CTTATGAAAT CCCATTTATT GCATTAAGGG AGGCGTTGAT AAACGCAGTA
GTTCACAGAG ATTATTCAAT TTTGGGATCA GACATTAAAG TTTCAATTTC TGACAGCCTT
TTAGAGATAA CTTCTCCAGG CTCCCTTCCA AGTACAATAA GTGTTGATGA CCTTGGAACA
GGATGTTCTG AAGTGAGAAA TCCCATAATT GCAAGAATAT TTAAAGAAAC AAAATTTATT
GAGCAGTGGG GGTCAGGATT TAGAAAAATA TTTAATGAAT GTGAAAAATA CGGGCTTAAA
AAGCCGGAAA TTATTGAAAC CTCATTTTTA AAAGTTAGAT TTTATCGACC GCTTGTTGGT
GACCGGTCGA TAACGGGCGA TACTACATCT GACCGGTCGA TAACGGGCGA TACTACAACT
CAGTATTTGG ATGTCCAATA TGCAGCAATA ATAAAACATG TTACTGAAAA TGGACAAATA
TCTTCAAAAG AAGTTGAATC AGTATTAAAA CTTAAGAAAA CAAGAGTCCA AGAGATTTTA
AAAGAAATGG TCGAAAAAAA TATCCTTGAA AAGAAAGGTA AAGCAAGAGC GACCCGATAT
ATTTTAAAAA GAATTAATTA A
 
Protein sequence
MAEKFLKSHL NLSGKIEGLQ RKDAYEIPFI ALREALINAV VHRDYSILGS DIKVSISDSL 
LEITSPGSLP STISVDDLGT GCSEVRNPII ARIFKETKFI EQWGSGFRKI FNECEKYGLK
KPEIIETSFL KVRFYRPLVG DRSITGDTTS DRSITGDTTT QYLDVQYAAI IKHVTENGQI
SSKEVESVLK LKKTRVQEIL KEMVEKNILE KKGKARATRY ILKRIN