Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Haur_5265 |
Symbol | |
ID | 5737223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Herpetosiphon aurantiacus ATCC 23779 |
Kingdom | Bacteria |
Replicon accession | NC_009974 |
Strand | - |
Start bp | 40382 |
End bp | 41236 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641282429 |
Product | TPR repeat-containing protein |
Protein accession | YP_001548020 |
Protein GI | 159901775 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.487256 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGTAACTC CAAGTATAGT CCACCTGGCT CTCATTAATT TTGCACCACT TTCGTTATAC CACCTCTTGG AGAGTCAAGG GCGGTATGGG GAGGCGCAGC GCTTGTATGA ACGGGCCTTG GCGGTGCGGG AAGCGGTGTT GGGGGCGGAG CATCCCGATA CGGCGACGAG TGTGCACAAT CTGGCTTCGG TCTTGAAGCG GCAAGGGCGG TATGCTGAGG CGCAGCGCTT GTATGAACGG GCCTTGGCGG TGCGGGAAAC GGTGTTGGGG GCGGAGCATC CCAATACGGC GTGGAGTGTG AACAATCTGG CGTTGGTCTT GGAGAGTCAA GGGCGGTATG CTGAGGCGCA GCGCTTGTTT GAACGGGCCT TGGCGATCAG GGAAGCGGTG TTGGGGGCGG AGCATCCCGC TACGGCGACG AGTGTGAACA ATCTGGCGGT GGTCTTGGAG AGTCAAGGGC GGTATGCTGA GGCGCAGCGC TTGTATGAAC GGGCCTTGGC GGTGCGGGAA GCGGTGTTGG GGGCGGAGCA TCCCGATACG GCGACGAGTG TGAACAATCT GGCGTTGGTC TTGAAGCGGC AAGGGCGGTA TGCTGAGGCG CAGCGCTTGT ATGAACGGGC ATTGGCTATC TATGAAGCAG TGTTGGGGGC GGAGCATCCC GATACGGCGA CGAGTGTGAA CAATCTGGCG GTGGTCTTAG AGCGTCAAGG GCGGTATGGG GAGGCGCAGC GCTTGTATGA ACGGGCATTG GCTATCTATG AAGCAGTGTT GGGGTCCGAG CATCCCGATA CCCAGATTAT TCGTGCGAAT CTCGTCTCTT TACAAGCCAT CATGAAGACA AAAGGCCAGT CGTAG
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Protein sequence | MVTPSIVHLA LINFAPLSLY HLLESQGRYG EAQRLYERAL AVREAVLGAE HPDTATSVHN LASVLKRQGR YAEAQRLYER ALAVRETVLG AEHPNTAWSV NNLALVLESQ GRYAEAQRLF ERALAIREAV LGAEHPATAT SVNNLAVVLE SQGRYAEAQR LYERALAVRE AVLGAEHPDT ATSVNNLALV LKRQGRYAEA QRLYERALAI YEAVLGAEHP DTATSVNNLA VVLERQGRYG EAQRLYERAL AIYEAVLGSE HPDTQIIRAN LVSLQAIMKT KGQS
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