Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Haur_5198 |
Symbol | |
ID | 5737156 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Herpetosiphon aurantiacus ATCC 23779 |
Kingdom | Bacteria |
Replicon accession | NC_009973 |
Strand | - |
Start bp | 284448 |
End bp | 286532 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641282362 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001547953 |
Protein GI | 159901707 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [COG2203] FOG: GAF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAGTAG CCCCCATTCC TAGTGATGAG TCAGCTCGTA TTCAGGCGCT CCATGGGCTT GGCATCTTAG ATACTCCGCC TGATCCACGG TTCGATCGCC TGACGCGGTT GGCGCAACGG CTGTTCCACG TCCCGATCGT CCTTATTTCG TTGGTTGATA CCAATCGTCA GTGGTTTAAG TCCTGTATTG GCCTCGATGT CCAGCAATCT AGTCGCGAGA TCTCGTTCTG TGCCCATGCG ATTCTGCAGC CCGATCGTCC CCTGATTATC CTTGATACGT GGTGCGATAC ACGTTTCGCT GACAACCCCG TTGTCAGCGG AACACCCCAT ATCCGCTTTT ATGCGGGCCA TGTGCTCCAT GCTCCCAGCG GCGCGGCGGT TGGGACGCTC TGCCTCCTCG ATACGGTTGT GCATAGCGTG TTTTCGGATG ATGATCAGGA GATTCTCGCT GACCTTGCGA TGCTTGTTGA GCGTGAGCTG GCGGCAAATA CCATGCATGA ACTGCTGCAA ACCCAGCATC GGCTGATGAC GGACTTTCAA GAAAGTGAAC TGCGCTTTCG GCAGATGGCA GAAACGATCG ATGCGGTATT CTGGATGTCG GATTCCACGC GACAGCAGTT GTTGTATATT AGTCCGGCGT ACGAACGAAT TTGGGGCTAT TCCTGCGCGA GCTTGTATGC GGATCTCCAA TCGTGGGTTA CGACCATTCA CCCTGATGAT CGTGCAAGCG TCACTGCGTC CATGTCCAAG CAGGCCCATA CCCTTCGTGC CCTTGAATAC CGGATTATCC GCTCGGATGG TGCGGAGCGT TGGATCTATG ACCAATCCTA TCCAATCTAT AATGATAGCG ATCAGGTCAT TCGCCTCGTT GGCCTTGCGC GTGATATTAC CCAACGGAAA CAGCAAGACC TCCGTGTCGT CCAGCTTACA GAGCAACTGA CCTCACTCAT GCAGAGTCTC CCTGGAGTCG TGTATCGGTG TAGTCCCGAT ATCAATTGGG GTGTCACGAT CCTCAGCGAT GGCATTGAAA CACTCACTGG CTATCCCGCA AGCGATTTCT TGCATAATAC CATCCGACCA TTTGTCAGTT GCATCGATCC CCTCGATAGG GTTCGGGTCG AGGAAACGAT GACTGCGGCG ATCATCGCCC AGCAACCCTA TAGCGTTGAT TACCGAATCA TACACCGCGA TGGCGAGGTC TGCTGGGTAA CGAACCGTGG GCGGGCTGTC TACGATGACG CTGGTCGTGT CCGCTGGTGT GATGGCGTAA TCATTGATGT GAACGCACGC GCTGCGATCG AAGCTGACCA TCGGCGGTTT GTGCAACTAG CTGATATGCT TCCAGAGTTT GTCGGTATGG CAACCCTCGA TGGTCAGCCG ATCTATATTA ATCCTGCTGG TCGTGCCTTG ATTGGGATGC GCCCCGAAGA ACCCTTAGCA CGTCAACCAT TAACGGCATT GCATCCCAGC TGGGTGCAGG AGTTGCTCCA GACAACGGCC CTGCCAACGG CGCTTGCAGA AGGGTACTGG AGCGGAGAGA CAGCCTTAGT AACGGCTGAT GGGAACGAGA TTCCTATTGA CCAGATGATC CTGTGCCATC GCGATGCTGC CGACCAACCG ACTCACTTCT CTACCATCGC CCGTGATCTG ACCCATGAGC GACAGGCGGC TGCTACTCGT CAAGCCCTCC AAGCAGAAAT ACTTCAAATT CATACGCGCA CGATTATGGA ACTGTCCACA CCCCTAATTC ATATTACCGA TACGACCATT CTGATGCCGC TGATCGGTGC AATTGATACG ATACGGGCAC AACGTATCCT TGAATCACTG CTCCAAGGGG TGAGTCAACA GCGGGCAAGT CGTGCGATTG TGGATCTCAC GGGTGTTCCA GCACTTGACC CCCACGTGGC TGCCATCTTT ATCCAAGCAG CTGATGCCGT GCGATTACTG GGAGCTGAGG TCATCGTGAC GGGCATCCGA CCTGAAATTG CCCAGACGAT CGTCACCATG GGGGTCGATC TCCGCAGGAT ACGGACTTAC AGTGATCTCC ACCAAGGAAT TAGCTATGCT ATGCAAGGGC TTTAA
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Protein sequence | MEVAPIPSDE SARIQALHGL GILDTPPDPR FDRLTRLAQR LFHVPIVLIS LVDTNRQWFK SCIGLDVQQS SREISFCAHA ILQPDRPLII LDTWCDTRFA DNPVVSGTPH IRFYAGHVLH APSGAAVGTL CLLDTVVHSV FSDDDQEILA DLAMLVEREL AANTMHELLQ TQHRLMTDFQ ESELRFRQMA ETIDAVFWMS DSTRQQLLYI SPAYERIWGY SCASLYADLQ SWVTTIHPDD RASVTASMSK QAHTLRALEY RIIRSDGAER WIYDQSYPIY NDSDQVIRLV GLARDITQRK QQDLRVVQLT EQLTSLMQSL PGVVYRCSPD INWGVTILSD GIETLTGYPA SDFLHNTIRP FVSCIDPLDR VRVEETMTAA IIAQQPYSVD YRIIHRDGEV CWVTNRGRAV YDDAGRVRWC DGVIIDVNAR AAIEADHRRF VQLADMLPEF VGMATLDGQP IYINPAGRAL IGMRPEEPLA RQPLTALHPS WVQELLQTTA LPTALAEGYW SGETALVTAD GNEIPIDQMI LCHRDAADQP THFSTIARDL THERQAAATR QALQAEILQI HTRTIMELST PLIHITDTTI LMPLIGAIDT IRAQRILESL LQGVSQQRAS RAIVDLTGVP ALDPHVAAIF IQAADAVRLL GAEVIVTGIR PEIAQTIVTM GVDLRRIRTY SDLHQGISYA MQGL
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