Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Haur_4915 |
Symbol | rplC |
ID | 5736751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Herpetosiphon aurantiacus ATCC 23779 |
Kingdom | Bacteria |
Replicon accession | NC_009972 |
Strand | + |
Start bp | 6254193 |
End bp | 6254831 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641282082 |
Product | 50S ribosomal protein L3 |
Protein accession | YP_001547673 |
Protein GI | 159901426 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0087] Ribosomal protein L3 |
TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0274485 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCAATG GTATTTTGGG TCGCAAAATT GGCATGACCC AGATCTTCAC CGAAAAAGGT GAAACCATTC CTGTCACCGT GATCGAAGCT GGCCCATGTG TGGTCACCCA ACTTCGCACC AAGGACAAGG ATGGCTATGA AGCAGTCCAA CTCGGCTTCG GCGAAATCAA ACCACGAAAA GTAACGAAGC CAATTCAAGG ACACCTGAAA GCTGCTGGTC GGCTGGTTCG CTTCATGCGC GAAGTGAAAA CCACTGACTT GAACGCACAC AATGTCGGCG ACGTGGTAAA TGTTGATATT TTCCAAATCG GCGAAAAGAT TGATGTCGTC GGCACAAGCA AAGGTCGCGG TTTTGCTGGT GTTGTTAAGC GCCACGGTTT CCGTGGTGGC CCAGCAACTC ACGGTCAAAG CGACCGCCAT CGCGCCCCAG GTTCGATTGG TTCAGGCACC ACCCCAGGCC GCGTCTGGAA AAACATGCGC ATGGCTGGTC GGATGGGCAA TGATCGCGTA ACCGTTCAAA ATTTGGAAGT GGTAAAAATT GACCTTGAAC GCCACGTAAT CTTAGTTAAA GGCTCAGTGC CAGGCGCTAA GAATGGTTTG GTGATGGTCT CACGGGCAGC TAAGGCCACG AAGAAATAG
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Protein sequence | MLNGILGRKI GMTQIFTEKG ETIPVTVIEA GPCVVTQLRT KDKDGYEAVQ LGFGEIKPRK VTKPIQGHLK AAGRLVRFMR EVKTTDLNAH NVGDVVNVDI FQIGEKIDVV GTSKGRGFAG VVKRHGFRGG PATHGQSDRH RAPGSIGSGT TPGRVWKNMR MAGRMGNDRV TVQNLEVVKI DLERHVILVK GSVPGAKNGL VMVSRAAKAT KK
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