| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4839 |
|---|
| Symbol | |
|---|
| ID | 5736684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 6168114 |
|---|
| End bp | 6168962 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641282004 |
|---|
| Product | intradiol ring-cleavage dioxygenase |
|---|
| Protein accession | YP_001547597 |
|---|
| Protein GI | 159901350 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATG ACGATCAACC AGTTGGCCGG ATTTTGAGTC GGCGCGAAGT GCTTAGGCTG
TTTGGGTTGG CTGGTTCGGC GGCGGTAATC GCTGGTTGCA GTAGTGAGGT TGCGCCAACT
GCGACGACTG TAGCTCAAGC AAGTGCCCCA ACCGCCACAG CTACCAGCGC CGCAACCAAT
ACCATTGCTG AGGCGGCAAC GGCAACCGCT GCCGCCACTA GCACTGCCGA AGCAACGGCA
ACGAGCGAGG CGGTGGCGGC TTTGCCAAGT TGTATTGTGC GCCCTGAGTT AACCGAAGGC
CCGTATTTTG TCGATGAAAA ACTCGAACGC TCGGATATTC GTTCTGATCC AAGCAACAAT
GCGGTTAGTG CAGGCACCCA ATTGGATATC AATGTTGTGG TGAGCCAAAT TGGGGCAGGC
ACATGTACGG CATTAGCTGG GGTAATTGTC GATTTGTGGC ATTGTGATGC TGATGGAGTC
TATTCCGATG CAACTGACCG CAGTTTTAAC ACTGTTGGTC AGAAATTCTT GCGTGGTTTT
CAGCGCACCG ATGCTAGTGG CCTCGCCAAA TTTACCACGA TTTATCCAGG CTGGTATCAA
GGGCGAGCGG TGCATATTCA CTTTAAAATT CGTACCGACG AAGGCTATGA GTTTACATCT
CAATTTTTCT TCGACGAAAG CTTGACCGAC GTGGTACACG CCCAAGCACC GTATGTGGCC
AAAGGCGTGC GTACCTTGCT CAACGATGGC GATGGCATCT ATCAACAAAG CGGTGGCCAA
ACGATCTTGA CAGTTACCCC AAGTGCTCAA GGCTATAGCG CTACCTTCGA GATTGGCCTA
CAGATTTAG
|
|---|
| Protein sequence | MDNDDQPVGR ILSRREVLRL FGLAGSAAVI AGCSSEVAPT ATTVAQASAP TATATSAATN
TIAEAATATA AATSTAEATA TSEAVAALPS CIVRPELTEG PYFVDEKLER SDIRSDPSNN
AVSAGTQLDI NVVVSQIGAG TCTALAGVIV DLWHCDADGV YSDATDRSFN TVGQKFLRGF
QRTDASGLAK FTTIYPGWYQ GRAVHIHFKI RTDEGYEFTS QFFFDESLTD VVHAQAPYVA
KGVRTLLNDG DGIYQQSGGQ TILTVTPSAQ GYSATFEIGL QI
|
|---|
| |