| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4827 |
|---|
| Symbol | |
|---|
| ID | 5736672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 6154274 |
|---|
| End bp | 6156031 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641281992 |
|---|
| Product | peptidase M61 domain-containing protein |
|---|
| Protein accession | YP_001547585 |
|---|
| Protein GI | 159901338 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTGT CTGTTGTCCT TGATTACACC CTCGCGATTC CTCAACCTCA ACGCCATCTC
ATCAACGTTA CATTGCGGAT TGAGGGTTTA ACGGGTTCTG AAACGTCGTT GCAATTGCCA
GCATGGACAC CAGGCTCGTA TCTGCTCCGC GAATATGCCC GCCACGTGCG CTTTGTCGAG
GCTCATACCG ACGGCCAAGC GCTAGCCATC CACAAAACTG ATCGCTTGAC ATGGCAGGTG
CAAACCAATG GGGCCAGTGC GATCACGGTA ACCTATCAAG TATATGGCTA TGAATTGACC
GTGCGCACCA ATCACATTGA TGCAACGCAC GCGCATATTG TGCCAGCCGC CACCTTGCTT
TATTTGCCCG AATATCAGGA TTGTCGCTAT AACGTACATC TGGAACTGCC AAGTAGCTGG
GAAGTTGCCA CGGGCTTGCC CAAATTGGCC GATGGTTGTT ATGGTACCAA CGATTTAGAT
GAATTGATGG ATTGTCCGTT TGAGGTCGGT GAATTGCGCC GCTACCGCTT TGACGTAGCC
GAAAAGGCTC ACGAGGTGGT GGTTTGGGGC CATGGCAACG AAGATATCGA GCAAGTGCTG
GCCGACACGA AGCAAATTGT CGAAACTGAG TATGCCTTCT GGGGCGATTT ACCCTACGAT
TATTATTTGT TTATTGTGTT GCTAGCTGGA GCCAATACTT ATGGCGGCTT AGAGCATCGT
AATTCAACCT CGCTCTTGCT ACCGCGCCAT GTCTTCAAAC CAAGCAAAAC CTATGAACGC
GCTCAAGGCC TAATTGCCCA TGAATTTTTT CATACCTGGA ATGTCAAACG GCTACGGGCT
GCCCCACTCG GCCCCTTCGA TTACACCCGC GAGAATTACA CTCGCTTGTT GTGGGTGATG
GAAGGCTTCA CCGAATACTA CACCGATTTG ATGTTGGTTC GCGCAGGCTT GATGACTCCC
CAACGCTACC TTGAGCGCTT GGCCGATGAT ATTAGCACGC TGCAAAATAC TCCTGGCCGC
TTGGTTCATA GCCTCAGCAG TTCCTCATTC GATGCTTGGA TCAAGTTCTA TCGACCTGAT
GAATCAACGC CTAACACGAC AGTTTCCTAT TATCTCAAGG GTGGGTTGGC GGCATTGGTG
CTCGATATGC AGTTGCGCGA GCAGAGTAAC GGTCAGCAAT CGCTTGATGA TTTGATTCGC
TATCTCTATC AGACGTATCC AATCACTGGC CCGGGGATTC CCGAAGCCGA TGGCATGCAG
CAAGCCCTGC AAGCACTCAC AGGCAGCGAT TGGAGTGACT ATTTCGCCAA GTATATCGAT
GGATTAAGCG AATTACCCTA CGCCGAAGCC TTTGCCACCG TTGGCTTGCA AATGCAATGG
AACTACAAAG ATCGTGATGC GCAAGGCAAT CCACGGCCCC AATTAGGGAT TCGCAGCAAA
GCTGTTGATG GTCGGGTGCA AATTACCCAT GTGCTCGATG GCGGCGACGC TGATCGGGCT
GGCTTGGCCG CTGGCGATGA ATTAATTGCG CTCGATGGTT GGCGCATCGA TGAAGATGGC
TTGAACAAGC GGCTAGCCGA TTATCCAATT GGCGCAACCG TGCAATTAAG TTTCTTCCGC
CGTGATGAAT TATTGCACGT GCCCGTTACA TTTAGCCAAC CCAACCCTGA TTTCTTGAGC
CTAACCTTGG TGAGCCAACC AAGCGCCAGC CAACGCCAAC AAGCAGCGAC ATGGCTCGGT
ACGCCATTGT TTAAATAA
|
|---|
| Protein sequence | MPVSVVLDYT LAIPQPQRHL INVTLRIEGL TGSETSLQLP AWTPGSYLLR EYARHVRFVE
AHTDGQALAI HKTDRLTWQV QTNGASAITV TYQVYGYELT VRTNHIDATH AHIVPAATLL
YLPEYQDCRY NVHLELPSSW EVATGLPKLA DGCYGTNDLD ELMDCPFEVG ELRRYRFDVA
EKAHEVVVWG HGNEDIEQVL ADTKQIVETE YAFWGDLPYD YYLFIVLLAG ANTYGGLEHR
NSTSLLLPRH VFKPSKTYER AQGLIAHEFF HTWNVKRLRA APLGPFDYTR ENYTRLLWVM
EGFTEYYTDL MLVRAGLMTP QRYLERLADD ISTLQNTPGR LVHSLSSSSF DAWIKFYRPD
ESTPNTTVSY YLKGGLAALV LDMQLREQSN GQQSLDDLIR YLYQTYPITG PGIPEADGMQ
QALQALTGSD WSDYFAKYID GLSELPYAEA FATVGLQMQW NYKDRDAQGN PRPQLGIRSK
AVDGRVQITH VLDGGDADRA GLAAGDELIA LDGWRIDEDG LNKRLADYPI GATVQLSFFR
RDELLHVPVT FSQPNPDFLS LTLVSQPSAS QRQQAATWLG TPLFK
|
|---|
| |