| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4793 |
|---|
| Symbol | |
|---|
| ID | 5736637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 6110182 |
|---|
| End bp | 6111711 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641281958 |
|---|
| Product | phosphodiesterase |
|---|
| Protein accession | YP_001547552 |
|---|
| Protein GI | 159901305 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1418] Predicted HD superfamily hydrolase |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR03319] conserved hypothetical protein YmdA/YtgF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0108516 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACTTTA TCCTTCCAGC TCTGGCTTTA CTCATTGGCC TAGCTGCAGG CGCAGGCGGT
GCCTATGTTT GGTTAACGAA AAAATCTGGT GTAGCACTGG CCCAAGCTGA AGCAGCAGCA
CAACTACAAT TAGAACAAGC CAAGACTGAG TACAAACAAT TGCAATTAAA AGCCCGCGAA
GAACAACAAC ACCTGCGGGA AGTTGGTGAA AACGAACTCC GCGAAGCCCG CTTACGCTTG
CAAAAACAAG AAGAACGGGT CAATCGCAAA GAAGAAACTC TCGAACGTAA GCTCGACCAA
ACCGAAAAGC GCGATCGCCA GTTAGGCCAG CGCGAGCGAG CGGTCGAAAA CTTACACAGC
GAAGCCGAAC GCCTACGCAC AGCTCAACAA GCTGAGCTAG AGCGGGTCGC AGGTCTCACT
AACGAACAAG CACGTGAAAT TATTCTCTCT CGTGTTGAAC AAGAAACCCG TGCCGAGGCT
GCTCGCCGCA TCCACGAAAT CGAAGCGGCA GCAAAGCTCG ATGGCGATCG GATTGCACGC
AAAATCGTTG GGTTGGCGAT CCAACGCTGT GCATCAGATT ATGTCGCCGA AATTACTGTA
AGCACGGTAC AACTGCCCAG CGAGGAACTC AAGGGTCGGA TTATCGGGCG CGAAGGGCGC
AATATTCGCG CATTCGAGCA AATTACTGGT GTCGATATTA TTGTCGATGA TACGCCCGAA
GCGGTCACAC TCTCGTGTCA CGACCCAGTA CGTCGTGAAG TAGCCCGCTT AACCCTGAAC
CGATTGTTGA AAGATGGTCG GATTCACCCC GCCCGGATTG AGGAAGTCGC TGATAAAACC
CGCCAAGACC TTGAGCAAAT AATCCGCGAA GAAGGCGAAC GCGTGGCCTA CGAAGCCAAC
GTCCAAGGCC TTCATCCAGA TCTCTTGAAG ATTCTGGGGC GGTTGAAATA TCGTACTAGC
TACGGCCAAA ATGTCTTGCA GCATTCGTTA GAATGTGCCT TTTTGGCAGG AGCGATGGCA
GCAGAATTGG GTGCCAATGT GCAGGTTGCC AAGACCGCAG CGCTGCTCCA TGATATTGGG
AAAGCCATTG ACCACGATGT ACAAGGGCCG CACGCGTTAA TCGGGGCTGA TATTGCCCGA
CGGCTTGGCC GCAACGCGGC GGTAGTTCAT GCAATTGCTG CCCATCATAA CGATGAGGAA
CCTCAAACTG TTGAGGCTTT TCTTGTTCAA GCCGCCGATG CCATCTCTGG TGGTCGCCCA
GGCGCACGCC GCGAGACCAT CGACTTGTAT ATTAAGCGGC TCGAAGCTCT TGAACATGTC
GCCACATCGT TTCCTGGTGT TCAACGGGCA TTCGCAATTC AAGCAGGCCG GGAAGTGCGG
GTTATGGTGC AACCCGATGC GCTTGATGAT CTTGAAAGTA TTCATTTGGC CCGCGAAGTG
GCCAAAAAGA TCGAGAGTAC CCTGCAATAT CCAGGTCAAA TCAAAGTTAC CGTCATCCGC
GAAACCCGTG CGGTTGATTA TGCACGGTAA
|
|---|
| Protein sequence | MDFILPALAL LIGLAAGAGG AYVWLTKKSG VALAQAEAAA QLQLEQAKTE YKQLQLKARE
EQQHLREVGE NELREARLRL QKQEERVNRK EETLERKLDQ TEKRDRQLGQ RERAVENLHS
EAERLRTAQQ AELERVAGLT NEQAREIILS RVEQETRAEA ARRIHEIEAA AKLDGDRIAR
KIVGLAIQRC ASDYVAEITV STVQLPSEEL KGRIIGREGR NIRAFEQITG VDIIVDDTPE
AVTLSCHDPV RREVARLTLN RLLKDGRIHP ARIEEVADKT RQDLEQIIRE EGERVAYEAN
VQGLHPDLLK ILGRLKYRTS YGQNVLQHSL ECAFLAGAMA AELGANVQVA KTAALLHDIG
KAIDHDVQGP HALIGADIAR RLGRNAAVVH AIAAHHNDEE PQTVEAFLVQ AADAISGGRP
GARRETIDLY IKRLEALEHV ATSFPGVQRA FAIQAGREVR VMVQPDALDD LESIHLAREV
AKKIESTLQY PGQIKVTVIR ETRAVDYAR
|
|---|
| |