| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4693 |
|---|
| Symbol | |
|---|
| ID | 5736540 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 5995222 |
|---|
| End bp | 5996808 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641281857 |
|---|
| Product | leucine-rich repeat-containing protein |
|---|
| Protein accession | YP_001547452 |
|---|
| Protein GI | 159901205 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGC AACTTTGCCG GGCGCGGATT GCCCAAAATG CCCAAACCCG TGAACCAACC
CTCGATCTTT CATCACTCAA CCTCACCAAC CTACCAGAAA CGATTGGCGA ATTAACTCAT
CTTGAAGCAT TAAATCTTGC CTGCAATCGT CCGCTGCAAC TACCGCCTGA ACTTGCAAAC
CTAACCAAGT TGCGCAAATT GGATCTCAGC TTTCCCCACC AATCTATAAT TCCAGCATGG
CTCGATCAAT TAACCAGCCT CGAAGAATTA GATATTCGGG CAAACCCGAC CACTGGCATT
CCCGAGGTTT TAACGCGATT ACCACGTTTG CAGAAACTTA ATCTTTATCT TGATGGATTT
GAAGCATTGC CGAGCGAATT GCTTAATCTA TCAACGCTAC ACAATATTAC GATTGGTTCA
ACAAAACTAA CCAGATTACC TGATTGGTTC AGTGATTTGC GCATCACAGC TTTAGAATAC
TATCTCAATT CTATTCCTAA CGAGCACTTA ATTGGGGCGA TAGACTCGCT TCAAGTGCTG
GATCTACAGC TTTACTATGG GAAACCTACA GCTTTTCCCG CATGGCTGAG GCAGATGCAT
CATTTACGCT GGCTTCGTTA TAACAGCCAA GCACTGGTGC CACCTTGGTT AATCGAATTA
CCGCAACTCT CGTATTTGGA AAGCAACGCC GATTTTAGCG AAATCAGCCA AGTTTGGCAT
TCATGGGAAT CACTTGAACA GCTCAAGTGT GGTTATGTTG ACGCGACGAC CTTGCCACCA
AACCTCAAAA CCTTAGAAAT ACCCATCAGC GGATCAGCAA TTCCTGAATC AATTCGCCAA
GTGCGCCAGC TTGAAGTGCT TCATTTATCG GGTAAAGGGT TTCGCGAGTT GCCTGGCTGG
GTTTTAGCAT TGCCCAACTT GCACACCTTG GATCTTATCA GCACAGAGAT TGATTACATC
CTAGCGCCTG ACCAGCCGAA CAATAGCCTA CGAAAACTTA TGATGCATAC CCTCTACTGT
GGTCGCAATC ACCGCTTGGA TGGTCTACGC AGCCTGCATA GGCTGGAAGA ATTAAGCCTG
AGTAATCATC GTCTCGGCCA GCTACCCGCA TGGCTCTCCG AATTGCAGCA TTTACGCGAG
TTGTCGATTG ATGATTGCGA GTTGACCGAT CTTGATCCAA GTTTGGGACA ACTTCATCAG
CTTGAAGCAC TCTATCTTCA TGGCAATGCT ATTCCGGTCG CGAGCTTAGA GTTAATGTTC
CCCCGATTAA CCAAACTCCA GCATTTATCA TTTGGGGTCG CAAACGATGA GTCATTTCCC
GCTAGCCTTC GCCAATTGCA TCAACTGCGT AGCTTGTATC TGAGAATCGG GCCAGAGCAC
AGCATCCCTG AATGGTTGAA TCAATTGACC AAACTCGAAA GCATTATGCT TGGCTATAAC
ATTCAGCCAA CACAGATCCC TTGGATCGAA GGCTGGCTGG CACTGCCGAA ATTACGCGAG
ATCGATATTC ATATCAAGCC AGAATTGTTT GATCCTGAGT TACTACAACG CTTTACCCAA
CGCGGCGTAA AAGTCAATCT TGGCTAA
|
|---|
| Protein sequence | MSEQLCRARI AQNAQTREPT LDLSSLNLTN LPETIGELTH LEALNLACNR PLQLPPELAN
LTKLRKLDLS FPHQSIIPAW LDQLTSLEEL DIRANPTTGI PEVLTRLPRL QKLNLYLDGF
EALPSELLNL STLHNITIGS TKLTRLPDWF SDLRITALEY YLNSIPNEHL IGAIDSLQVL
DLQLYYGKPT AFPAWLRQMH HLRWLRYNSQ ALVPPWLIEL PQLSYLESNA DFSEISQVWH
SWESLEQLKC GYVDATTLPP NLKTLEIPIS GSAIPESIRQ VRQLEVLHLS GKGFRELPGW
VLALPNLHTL DLISTEIDYI LAPDQPNNSL RKLMMHTLYC GRNHRLDGLR SLHRLEELSL
SNHRLGQLPA WLSELQHLRE LSIDDCELTD LDPSLGQLHQ LEALYLHGNA IPVASLELMF
PRLTKLQHLS FGVANDESFP ASLRQLHQLR SLYLRIGPEH SIPEWLNQLT KLESIMLGYN
IQPTQIPWIE GWLALPKLRE IDIHIKPELF DPELLQRFTQ RGVKVNLG
|
|---|
| |